Strain Fitness in Pseudomonas simiae WCS417 around PS417_27935
Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.012 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 6,025,152 | + | PS417_27930 | 0.27 | +0.4 | |
| 6,025,575 | + | PS417_27930 | 0.58 | -0.5 | |
| 6,025,575 | + | PS417_27930 | 0.58 | -0.0 | |
| 6,025,576 | - | PS417_27930 | 0.58 | -0.2 | |
| 6,025,576 | - | PS417_27930 | 0.58 | +0.0 | |
| 6,025,590 | - | PS417_27930 | 0.59 | -2.2 | |
| 6,025,761 | + | PS417_27930 | 0.72 | +0.2 | |
| 6,025,836 | + | PS417_27930 | 0.78 | +0.0 | |
| 6,026,229 | + | PS417_27935 | 0.15 | -0.5 | |
| 6,026,678 | + | -0.3 | |||
| 6,026,682 | + | -0.5 | |||
| 6,026,682 | + | +0.6 | |||
| 6,026,682 | + | -1.1 | |||
| 6,026,682 | + | -1.9 | |||
| 6,026,682 | + | -0.3 | |||
| 6,026,682 | + | -0.1 | |||
| 6,026,682 | + | +0.0 | |||
| 6,026,682 | + | +1.4 | |||
| 6,026,682 | + | -0.1 | |||
| 6,026,682 | + | -1.2 | |||
| 6,026,683 | - | +0.3 | |||
| 6,026,683 | - | -0.0 | |||
| 6,026,683 | - | +1.1 | |||
| 6,026,683 | - | +0.3 | |||
| 6,026,683 | - | +0.2 | |||
| 6,026,683 | - | +0.2 | |||
| 6,026,809 | + | +0.5 | |||
| 6,026,817 | + | +0.5 | |||
| 6,027,202 | - | PS417_27940 | 0.36 | +0.2 |
Or see this region's nucleotide sequence