Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02475 and PS417_02480 overlap by 1 nucleotides PS417_02480 and PS417_02485 overlap by 1 nucleotides
PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499
_02475
PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415
_02480
PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386
_02485
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.409 kb on + strand at 567.285 kb on + strand, within PS417_02480 at 567.285 kb on + strand, within PS417_02480 at 567.660 kb on + strand, within PS417_02480 at 567.661 kb on - strand, within PS417_02480 at 567.700 kb on - strand, within PS417_02480 at 567.705 kb on + strand, within PS417_02480 at 567.706 kb on - strand, within PS417_02480 at 567.830 kb on + strand, within PS417_02480 at 567.873 kb on + strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 568.171 kb on + strand, within PS417_02480 at 568.700 kb on - strand, within PS417_02485 at 568.731 kb on - strand, within PS417_02485 at 569.016 kb on - strand, within PS417_02485 at 569.018 kb on - strand, within PS417_02485 at 569.092 kb on + strand, within PS417_02485 at 569.093 kb on - strand, within PS417_02485 at 569.124 kb on + strand, within PS417_02485 at 569.179 kb on - strand, within PS417_02485
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 566,296 + PS417_02475 0.86 -0.4 566,296 + PS417_02475 0.86 -0.2 566,296 + +3.2 566,297 - PS417_02475 0.86 -1.4 566,297 - PS417_02475 0.86 -2.0 566,297 - PS417_02475 0.86 -0.0 566,297 - PS417_02475 0.86 -2.3 566,409 + -0.2 567,285 + PS417_02480 0.41 -0.3 567,285 + PS417_02480 0.41 -0.4 567,660 + PS417_02480 0.61 -0.3 567,661 - PS417_02480 0.61 -0.7 567,700 - PS417_02480 0.63 -1.7 567,705 + PS417_02480 0.63 -0.1 567,706 - PS417_02480 0.63 -2.4 567,830 + PS417_02480 0.69 +0.9 567,873 + PS417_02480 0.72 +1.2 567,874 - PS417_02480 0.72 -3.9 567,874 - PS417_02480 0.72 -2.1 568,171 + PS417_02480 0.87 +0.1 568,700 - PS417_02485 0.29 -0.7 568,731 - PS417_02485 0.33 -3.4 569,016 - PS417_02485 0.62 -2.3 569,018 - PS417_02485 0.62 -2.6 569,092 + PS417_02485 0.70 -3.2 569,093 - PS417_02485 0.70 -2.5 569,124 + PS417_02485 0.73 -2.8 569,179 - PS417_02485 0.79 -2.4
Or see this region's nucleotide sequence