Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02170 and PS417_02175 are separated by 227 nucleotides PS417_02175 and PS417_02180 are separated by 460 nucleotides
PS417_02170: PS417_02170 - acyl-CoA dehydrogenase, at 485,017 to 486,819
_02170
PS417_02175: PS417_02175 - transcriptional regulator, at 487,047 to 491,000
_02175
PS417_02180: PS417_02180 - proline:sodium symporter PutP, at 491,461 to 492,945
_02180
Position (kb) 487
488
489
490
491
492 Strain fitness (log2 ratio) -1
0
1
2
3 at 486.257 kb on + strand, within PS417_02170 at 486.499 kb on + strand, within PS417_02170 at 486.773 kb on + strand at 486.774 kb on - strand at 486.827 kb on + strand at 486.828 kb on - strand at 487.095 kb on - strand at 487.431 kb on + strand at 487.431 kb on + strand at 487.432 kb on - strand at 487.798 kb on + strand, within PS417_02175 at 488.060 kb on - strand, within PS417_02175 at 488.991 kb on + strand, within PS417_02175 at 489.626 kb on - strand, within PS417_02175 at 489.760 kb on - strand, within PS417_02175 at 490.109 kb on - strand, within PS417_02175 at 491.272 kb on + strand at 491.385 kb on + strand at 491.385 kb on + strand at 491.386 kb on - strand at 491.430 kb on + strand at 491.431 kb on - strand at 491.461 kb on - strand at 491.461 kb on - strand at 491.469 kb on + strand at 491.470 kb on - strand at 491.470 kb on - strand at 491.473 kb on - strand at 491.473 kb on - strand at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.666 kb on - strand, within PS417_02180 at 491.719 kb on + strand, within PS417_02180 at 491.797 kb on + strand, within PS417_02180 at 491.980 kb on + strand, within PS417_02180
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 486,257 + PS417_02170 0.69 +0.2 486,499 + PS417_02170 0.82 -0.3 486,773 + +0.6 486,774 - -0.7 486,827 + -0.1 486,828 - +3.3 487,095 - -0.2 487,431 + +0.8 487,431 + +0.7 487,432 - -0.8 487,798 + PS417_02175 0.19 -0.2 488,060 - PS417_02175 0.26 -1.0 488,991 + PS417_02175 0.49 -0.5 489,626 - PS417_02175 0.65 -1.1 489,760 - PS417_02175 0.69 -1.7 490,109 - PS417_02175 0.77 -0.3 491,272 + -0.3 491,385 + +1.2 491,385 + -0.1 491,386 - +0.4 491,430 + +0.2 491,431 - -0.1 491,461 - +0.2 491,461 - +0.2 491,469 + -1.2 491,470 - +0.9 491,470 - -0.1 491,473 - -0.4 491,473 - +1.0 491,665 + PS417_02180 0.14 -0.4 491,665 + PS417_02180 0.14 -1.0 491,665 + PS417_02180 0.14 +0.4 491,666 - PS417_02180 0.14 +0.9 491,719 + PS417_02180 0.17 -0.7 491,797 + PS417_02180 0.23 +0.8 491,980 + PS417_02180 0.35 -0.4
Or see this region's nucleotide sequence