Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02060 and PS417_02065 are separated by 33 nucleotides PS417_02065 and PS417_02070 overlap by 11 nucleotides PS417_02070 and PS417_02075 are separated by 29 nucleotides
PS417_02060: PS417_02060 - FAD-dependent oxidoreductase, at 461,182 to 462,429
_02060
PS417_02065: PS417_02065 - membrane protein, at 462,463 to 464,775
_02065
PS417_02070: PS417_02070 - membrane protein, at 464,765 to 465,427
_02070
PS417_02075: PS417_02075 - thioesterase, at 465,457 to 465,882
_02075
Position (kb)
462
463
464
465 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 461.814 kb on + strand, within PS417_02060 at 461.815 kb on - strand, within PS417_02060 at 461.992 kb on + strand, within PS417_02060 at 462.226 kb on + strand, within PS417_02060 at 462.328 kb on + strand at 462.328 kb on + strand at 462.328 kb on + strand at 462.328 kb on + strand at 462.329 kb on - strand at 462.329 kb on - strand at 462.329 kb on - strand at 462.421 kb on + strand at 462.421 kb on + strand at 462.466 kb on + strand at 462.467 kb on - strand at 462.467 kb on - strand at 462.504 kb on + strand at 462.562 kb on - strand at 462.625 kb on + strand at 463.063 kb on + strand, within PS417_02065 at 463.063 kb on + strand, within PS417_02065 at 463.090 kb on - strand, within PS417_02065 at 463.710 kb on - strand, within PS417_02065 at 463.811 kb on + strand, within PS417_02065 at 463.812 kb on - strand, within PS417_02065 at 463.835 kb on - strand, within PS417_02065 at 463.879 kb on - strand, within PS417_02065 at 463.982 kb on - strand, within PS417_02065 at 463.982 kb on - strand, within PS417_02065 at 464.083 kb on + strand, within PS417_02065 at 464.084 kb on - strand, within PS417_02065 at 464.573 kb on - strand at 464.578 kb on + strand at 464.610 kb on + strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.828 kb on - strand at 464.828 kb on - strand at 465.330 kb on - strand, within PS417_02070 at 465.476 kb on - strand at 465.596 kb on + strand, within PS417_02075 at 465.597 kb on - strand, within PS417_02075 at 465.597 kb on - strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.735 kb on - strand, within PS417_02075 at 465.735 kb on - strand, within PS417_02075
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 461,814 + PS417_02060 0.51 +0.1 461,815 - PS417_02060 0.51 -0.7 461,992 + PS417_02060 0.65 +0.1 462,226 + PS417_02060 0.84 -0.6 462,328 + -1.3 462,328 + -0.1 462,328 + +0.3 462,328 + +1.3 462,329 - -0.3 462,329 - +0.0 462,329 - -0.4 462,421 + -0.2 462,421 + -0.6 462,466 + +0.6 462,467 - +0.2 462,467 - -0.7 462,504 + -0.0 462,562 - +1.1 462,625 + -2.6 463,063 + PS417_02065 0.26 +0.1 463,063 + PS417_02065 0.26 +1.3 463,090 - PS417_02065 0.27 +1.5 463,710 - PS417_02065 0.54 +1.1 463,811 + PS417_02065 0.58 +0.3 463,812 - PS417_02065 0.58 +1.5 463,835 - PS417_02065 0.59 +0.8 463,879 - PS417_02065 0.61 +0.7 463,982 - PS417_02065 0.66 +0.8 463,982 - PS417_02065 0.66 +0.9 464,083 + PS417_02065 0.70 -0.3 464,084 - PS417_02065 0.70 +0.4 464,573 - +0.4 464,578 + -0.6 464,610 + -0.1 464,611 - +0.6 464,611 - +0.9 464,611 - +0.2 464,611 - +1.0 464,828 - +0.6 464,828 - +0.8 465,330 - PS417_02070 0.85 +0.5 465,476 - +2.0 465,596 + PS417_02075 0.33 -3.2 465,597 - PS417_02075 0.33 +1.9 465,597 - PS417_02075 0.33 -0.1 465,734 + PS417_02075 0.65 +0.1 465,734 + PS417_02075 0.65 +0.2 465,734 + PS417_02075 0.65 +0.3 465,735 - PS417_02075 0.65 -0.4 465,735 - PS417_02075 0.65 +0.9
Or see this region's nucleotide sequence