Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20380 and PS417_20385 are separated by 117 nucleotides PS417_20385 and PS417_20390 are separated by 31 nucleotides PS417_20390 and PS417_20395 overlap by 4 nucleotides PS417_20395 and PS417_20400 overlap by 1 nucleotides
PS417_20380: PS417_20380 - hypothetical protein, at 4,421,642 to 4,422,016
_20380
PS417_20385: PS417_20385 - hypothetical protein, at 4,422,134 to 4,422,505
_20385
PS417_20390: PS417_20390 - hypothetical protein, at 4,422,537 to 4,424,540
_20390
PS417_20395: PS417_20395 - hypothetical protein, at 4,424,537 to 4,424,998
_20395
PS417_20400: PS417_20400 - hypothetical protein, at 4,424,998 to 4,426,239
_20400
Position (kb) 4422
4423
4424
4425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4421.549 kb on + strand at 4421.549 kb on + strand at 4421.550 kb on - strand at 4421.550 kb on - strand at 4421.550 kb on - strand at 4421.581 kb on + strand at 4421.581 kb on + strand at 4421.581 kb on + strand at 4421.643 kb on + strand at 4421.643 kb on + strand at 4421.643 kb on + strand at 4421.684 kb on + strand, within PS417_20380 at 4421.685 kb on - strand, within PS417_20380 at 4421.777 kb on + strand, within PS417_20380 at 4421.778 kb on - strand, within PS417_20380 at 4421.785 kb on + strand, within PS417_20380 at 4421.819 kb on + strand, within PS417_20380 at 4421.819 kb on + strand, within PS417_20380 at 4421.820 kb on - strand, within PS417_20380 at 4421.848 kb on + strand, within PS417_20380 at 4421.885 kb on - strand, within PS417_20380 at 4421.962 kb on + strand, within PS417_20380 at 4421.963 kb on - strand, within PS417_20380 at 4421.976 kb on - strand, within PS417_20380 at 4422.058 kb on - strand at 4422.067 kb on - strand at 4422.067 kb on - strand at 4422.067 kb on - strand at 4422.067 kb on - strand at 4422.114 kb on + strand at 4422.114 kb on + strand at 4422.114 kb on + strand at 4422.115 kb on - strand at 4422.216 kb on + strand, within PS417_20385 at 4422.216 kb on + strand, within PS417_20385 at 4422.289 kb on + strand, within PS417_20385 at 4422.289 kb on + strand, within PS417_20385 at 4422.290 kb on - strand at 4422.494 kb on + strand at 4422.494 kb on + strand at 4422.494 kb on + strand at 4422.494 kb on + strand at 4422.494 kb on + strand at 4422.495 kb on - strand at 4422.495 kb on - strand at 4422.495 kb on - strand at 4422.495 kb on - strand at 4422.495 kb on - strand at 4422.495 kb on - strand at 4422.495 kb on - strand at 4422.496 kb on + strand at 4422.497 kb on - strand at 4422.512 kb on + strand at 4422.512 kb on + strand at 4422.512 kb on + strand at 4422.512 kb on + strand at 4422.513 kb on - strand at 4422.513 kb on - strand at 4422.513 kb on - strand at 4422.513 kb on - strand at 4422.515 kb on + strand at 4422.516 kb on - strand at 4422.516 kb on - strand at 4422.516 kb on - strand at 4422.534 kb on - strand at 4422.596 kb on - strand at 4422.596 kb on - strand at 4422.596 kb on - strand at 4422.596 kb on - strand at 4422.596 kb on - strand at 4422.596 kb on - strand at 4422.651 kb on + strand at 4422.652 kb on - strand at 4422.732 kb on + strand at 4422.808 kb on + strand, within PS417_20390 at 4422.809 kb on - strand, within PS417_20390 at 4422.851 kb on + strand, within PS417_20390 at 4422.851 kb on + strand, within PS417_20390 at 4422.852 kb on - strand, within PS417_20390 at 4422.911 kb on - strand, within PS417_20390 at 4422.911 kb on - strand, within PS417_20390 at 4422.948 kb on + strand, within PS417_20390 at 4423.031 kb on + strand, within PS417_20390 at 4423.031 kb on + strand, within PS417_20390 at 4423.031 kb on + strand, within PS417_20390 at 4423.032 kb on - strand, within PS417_20390 at 4423.033 kb on + strand, within PS417_20390 at 4423.033 kb on + strand, within PS417_20390 at 4423.033 kb on + strand at 4423.033 kb on + strand, within PS417_20390 at 4423.034 kb on - strand at 4423.034 kb on - strand, within PS417_20390 at 4423.034 kb on - strand, within PS417_20390 at 4423.034 kb on - strand, within PS417_20390 at 4423.034 kb on - strand, within PS417_20390 at 4423.034 kb on - strand, within PS417_20390 at 4423.034 kb on - strand at 4423.034 kb on - strand, within PS417_20390 at 4423.082 kb on + strand, within PS417_20390 at 4423.083 kb on - strand, within PS417_20390 at 4423.083 kb on - strand, within PS417_20390 at 4423.123 kb on + strand at 4423.124 kb on - strand, within PS417_20390 at 4423.124 kb on - strand, within PS417_20390 at 4423.149 kb on - strand, within PS417_20390 at 4423.403 kb on - strand, within PS417_20390 at 4423.503 kb on + strand, within PS417_20390 at 4423.503 kb on + strand, within PS417_20390 at 4423.503 kb on + strand, within PS417_20390 at 4423.503 kb on + strand, within PS417_20390 at 4423.503 kb on + strand, within PS417_20390 at 4423.504 kb on - strand, within PS417_20390 at 4423.504 kb on - strand, within PS417_20390 at 4423.504 kb on - strand, within PS417_20390 at 4423.504 kb on - strand, within PS417_20390 at 4423.504 kb on - strand, within PS417_20390 at 4423.504 kb on - strand, within PS417_20390 at 4423.667 kb on + strand, within PS417_20390 at 4423.667 kb on + strand, within PS417_20390 at 4423.667 kb on + strand, within PS417_20390 at 4423.667 kb on + strand, within PS417_20390 at 4423.668 kb on - strand, within PS417_20390 at 4423.798 kb on + strand, within PS417_20390 at 4423.798 kb on + strand, within PS417_20390 at 4423.799 kb on - strand, within PS417_20390 at 4423.799 kb on - strand, within PS417_20390 at 4423.832 kb on - strand, within PS417_20390 at 4423.832 kb on - strand, within PS417_20390 at 4423.861 kb on - strand, within PS417_20390 at 4423.861 kb on - strand, within PS417_20390 at 4423.888 kb on + strand, within PS417_20390 at 4423.888 kb on + strand, within PS417_20390 at 4423.924 kb on + strand, within PS417_20390 at 4423.924 kb on + strand, within PS417_20390 at 4423.925 kb on - strand, within PS417_20390 at 4423.925 kb on - strand at 4423.946 kb on + strand, within PS417_20390 at 4423.946 kb on + strand, within PS417_20390 at 4423.946 kb on + strand, within PS417_20390 at 4423.946 kb on + strand, within PS417_20390 at 4423.947 kb on - strand, within PS417_20390 at 4424.003 kb on - strand, within PS417_20390 at 4424.003 kb on - strand, within PS417_20390 at 4424.180 kb on + strand, within PS417_20390 at 4424.180 kb on + strand, within PS417_20390 at 4424.181 kb on - strand, within PS417_20390 at 4424.183 kb on - strand, within PS417_20390 at 4424.244 kb on + strand, within PS417_20390 at 4424.364 kb on - strand at 4424.462 kb on + strand at 4424.463 kb on - strand at 4424.463 kb on - strand at 4424.508 kb on + strand at 4424.521 kb on + strand at 4424.526 kb on + strand at 4424.526 kb on + strand at 4424.526 kb on + strand at 4424.526 kb on + strand at 4424.527 kb on - strand at 4424.527 kb on - strand at 4424.527 kb on - strand at 4424.530 kb on + strand at 4424.531 kb on - strand at 4424.531 kb on - strand at 4424.541 kb on - strand at 4424.548 kb on + strand at 4424.549 kb on - strand at 4424.565 kb on + strand at 4424.570 kb on - strand at 4424.570 kb on - strand at 4424.617 kb on - strand, within PS417_20395 at 4424.617 kb on - strand, within PS417_20395 at 4424.617 kb on - strand, within PS417_20395 at 4424.853 kb on + strand, within PS417_20395 at 4424.853 kb on + strand, within PS417_20395 at 4424.854 kb on - strand, within PS417_20395 at 4424.854 kb on - strand, within PS417_20395 at 4424.854 kb on - strand, within PS417_20395 at 4424.854 kb on - strand, within PS417_20395 at 4424.877 kb on + strand, within PS417_20395 at 4424.877 kb on + strand, within PS417_20395 at 4424.878 kb on - strand, within PS417_20395 at 4424.919 kb on + strand, within PS417_20395 at 4424.919 kb on + strand, within PS417_20395 at 4424.970 kb on + strand at 4424.971 kb on - strand at 4424.971 kb on - strand at 4424.971 kb on - strand at 4424.971 kb on - strand at 4424.971 kb on - strand at 4424.971 kb on - strand at 4424.992 kb on + strand at 4425.000 kb on - strand at 4425.062 kb on + strand at 4425.063 kb on - strand at 4425.063 kb on - strand at 4425.063 kb on - strand at 4425.248 kb on + strand, within PS417_20400 at 4425.248 kb on + strand, within PS417_20400 at 4425.248 kb on + strand, within PS417_20400 at 4425.248 kb on + strand, within PS417_20400 at 4425.248 kb on + strand, within PS417_20400 at 4425.248 kb on + strand, within PS417_20400 at 4425.248 kb on + strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.249 kb on - strand, within PS417_20400 at 4425.339 kb on + strand, within PS417_20400 at 4425.339 kb on + strand, within PS417_20400 at 4425.339 kb on + strand, within PS417_20400 at 4425.339 kb on + strand, within PS417_20400 at 4425.340 kb on - strand, within PS417_20400 at 4425.340 kb on - strand, within PS417_20400 at 4425.344 kb on + strand, within PS417_20400 at 4425.344 kb on + strand, within PS417_20400 at 4425.345 kb on - strand, within PS417_20400 at 4425.467 kb on + strand, within PS417_20400
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 4,421,549 + -0.1 4,421,549 + +0.0 4,421,550 - -0.3 4,421,550 - -0.1 4,421,550 - -0.9 4,421,581 + -2.0 4,421,581 + -0.1 4,421,581 + +0.7 4,421,643 + +0.6 4,421,643 + -0.2 4,421,643 + +0.2 4,421,684 + PS417_20380 0.11 +0.3 4,421,685 - PS417_20380 0.11 +0.4 4,421,777 + PS417_20380 0.36 -1.0 4,421,778 - PS417_20380 0.36 -3.5 4,421,785 + PS417_20380 0.38 +0.0 4,421,819 + PS417_20380 0.47 +0.0 4,421,819 + PS417_20380 0.47 +0.1 4,421,820 - PS417_20380 0.47 -0.4 4,421,848 + PS417_20380 0.55 -0.6 4,421,885 - PS417_20380 0.65 -0.4 4,421,962 + PS417_20380 0.85 +0.3 4,421,963 - PS417_20380 0.86 -0.4 4,421,976 - PS417_20380 0.89 -0.6 4,422,058 - -0.4 4,422,067 - +0.1 4,422,067 - -0.6 4,422,067 - -2.5 4,422,067 - -0.3 4,422,114 + -0.0 4,422,114 + +0.5 4,422,114 + -0.3 4,422,115 - +0.3 4,422,216 + PS417_20385 0.22 +0.1 4,422,216 + PS417_20385 0.22 -0.0 4,422,289 + PS417_20385 0.42 +0.1 4,422,289 + PS417_20385 0.42 -0.2 4,422,290 - +1.3 4,422,494 + +0.3 4,422,494 + +0.0 4,422,494 + -0.1 4,422,494 + -0.0 4,422,494 + +0.1 4,422,495 - +0.5 4,422,495 - +1.2 4,422,495 - +0.9 4,422,495 - -0.2 4,422,495 - -0.1 4,422,495 - +0.1 4,422,495 - +0.5 4,422,496 + +0.5 4,422,497 - -0.2 4,422,512 + -1.3 4,422,512 + +0.1 4,422,512 + -0.4 4,422,512 + +0.8 4,422,513 - +0.0 4,422,513 - -0.8 4,422,513 - +0.0 4,422,513 - -1.1 4,422,515 + +0.2 4,422,516 - +0.1 4,422,516 - -0.4 4,422,516 - -0.0 4,422,534 - +4.4 4,422,596 - +0.8 4,422,596 - +0.1 4,422,596 - +0.2 4,422,596 - +1.1 4,422,596 - +1.6 4,422,596 - +0.5 4,422,651 + +0.5 4,422,652 - -0.2 4,422,732 + +1.0 4,422,808 + PS417_20390 0.14 +0.4 4,422,809 - PS417_20390 0.14 +0.1 4,422,851 + PS417_20390 0.16 -0.0 4,422,851 + PS417_20390 0.16 +0.3 4,422,852 - PS417_20390 0.16 -0.0 4,422,911 - PS417_20390 0.19 +1.6 4,422,911 - PS417_20390 0.19 +0.5 4,422,948 + PS417_20390 0.21 -0.4 4,423,031 + PS417_20390 0.25 -0.5 4,423,031 + PS417_20390 0.25 +0.8 4,423,031 + PS417_20390 0.25 +0.3 4,423,032 - PS417_20390 0.25 +1.0 4,423,033 + PS417_20390 0.25 -0.2 4,423,033 + PS417_20390 0.25 +0.8 4,423,033 + +2.2 4,423,033 + PS417_20390 0.25 -0.3 4,423,034 - -0.8 4,423,034 - PS417_20390 0.25 +0.5 4,423,034 - PS417_20390 0.25 +0.7 4,423,034 - PS417_20390 0.25 +0.4 4,423,034 - PS417_20390 0.25 +0.7 4,423,034 - PS417_20390 0.25 +1.3 4,423,034 - -1.1 4,423,034 - PS417_20390 0.25 +1.3 4,423,082 + PS417_20390 0.27 +0.6 4,423,083 - PS417_20390 0.27 -0.1 4,423,083 - PS417_20390 0.27 +0.3 4,423,123 + -0.8 4,423,124 - PS417_20390 0.29 +0.1 4,423,124 - PS417_20390 0.29 +0.3 4,423,149 - PS417_20390 0.31 +0.0 4,423,403 - PS417_20390 0.43 -0.3 4,423,503 + PS417_20390 0.48 +0.5 4,423,503 + PS417_20390 0.48 +1.6 4,423,503 + PS417_20390 0.48 -0.7 4,423,503 + PS417_20390 0.48 +0.3 4,423,503 + PS417_20390 0.48 +1.4 4,423,504 - PS417_20390 0.48 +0.8 4,423,504 - PS417_20390 0.48 +2.2 4,423,504 - PS417_20390 0.48 +0.5 4,423,504 - PS417_20390 0.48 +0.5 4,423,504 - PS417_20390 0.48 +0.9 4,423,504 - PS417_20390 0.48 +0.8 4,423,667 + PS417_20390 0.56 +1.7 4,423,667 + PS417_20390 0.56 +0.9 4,423,667 + PS417_20390 0.56 -0.5 4,423,667 + PS417_20390 0.56 -0.9 4,423,668 - PS417_20390 0.56 -0.0 4,423,798 + PS417_20390 0.63 +0.1 4,423,798 + PS417_20390 0.63 +1.2 4,423,799 - PS417_20390 0.63 +0.7 4,423,799 - PS417_20390 0.63 +0.6 4,423,832 - PS417_20390 0.65 -0.4 4,423,832 - PS417_20390 0.65 +0.9 4,423,861 - PS417_20390 0.66 +0.9 4,423,861 - PS417_20390 0.66 +0.3 4,423,888 + PS417_20390 0.67 +0.4 4,423,888 + PS417_20390 0.67 -2.0 4,423,924 + PS417_20390 0.69 +0.6 4,423,924 + PS417_20390 0.69 +0.4 4,423,925 - PS417_20390 0.69 +0.8 4,423,925 - +3.8 4,423,946 + PS417_20390 0.70 +1.0 4,423,946 + PS417_20390 0.70 +0.6 4,423,946 + PS417_20390 0.70 +0.3 4,423,946 + PS417_20390 0.70 -0.3 4,423,947 - PS417_20390 0.70 +0.1 4,424,003 - PS417_20390 0.73 -0.5 4,424,003 - PS417_20390 0.73 +0.4 4,424,180 + PS417_20390 0.82 +0.7 4,424,180 + PS417_20390 0.82 +0.2 4,424,181 - PS417_20390 0.82 -1.0 4,424,183 - PS417_20390 0.82 +0.7 4,424,244 + PS417_20390 0.85 +0.6 4,424,364 - -0.3 4,424,462 + +0.5 4,424,463 - +0.5 4,424,463 - +2.1 4,424,508 + -1.1 4,424,521 + +0.5 4,424,526 + -1.2 4,424,526 + +0.1 4,424,526 + -0.1 4,424,526 + -0.3 4,424,527 - +0.5 4,424,527 - -0.0 4,424,527 - -0.2 4,424,530 + +0.5 4,424,531 - +0.5 4,424,531 - +0.1 4,424,541 - +0.9 4,424,548 + -0.1 4,424,549 - -0.5 4,424,565 + +0.0 4,424,570 - +0.5 4,424,570 - +0.5 4,424,617 - PS417_20395 0.17 -1.0 4,424,617 - PS417_20395 0.17 +0.6 4,424,617 - PS417_20395 0.17 +0.5 4,424,853 + PS417_20395 0.68 -1.1 4,424,853 + PS417_20395 0.68 -0.8 4,424,854 - PS417_20395 0.69 +0.2 4,424,854 - PS417_20395 0.69 +1.1 4,424,854 - PS417_20395 0.69 -0.3 4,424,854 - PS417_20395 0.69 +0.7 4,424,877 + PS417_20395 0.74 +0.3 4,424,877 + PS417_20395 0.74 +0.2 4,424,878 - PS417_20395 0.74 +0.4 4,424,919 + PS417_20395 0.83 +0.9 4,424,919 + PS417_20395 0.83 -0.1 4,424,970 + +0.5 4,424,971 - +0.2 4,424,971 - +0.9 4,424,971 - +0.4 4,424,971 - -0.4 4,424,971 - +0.6 4,424,971 - +0.2 4,424,992 + +0.2 4,425,000 - -1.1 4,425,062 + +0.2 4,425,063 - +0.7 4,425,063 - -0.7 4,425,063 - +0.6 4,425,248 + PS417_20400 0.20 +0.4 4,425,248 + PS417_20400 0.20 +0.6 4,425,248 + PS417_20400 0.20 +0.3 4,425,248 + PS417_20400 0.20 -0.1 4,425,248 + PS417_20400 0.20 +0.0 4,425,248 + PS417_20400 0.20 +0.3 4,425,248 + PS417_20400 0.20 +1.1 4,425,249 - PS417_20400 0.20 -0.3 4,425,249 - PS417_20400 0.20 +1.0 4,425,249 - PS417_20400 0.20 -0.2 4,425,249 - PS417_20400 0.20 -0.4 4,425,249 - PS417_20400 0.20 +0.6 4,425,249 - PS417_20400 0.20 +0.3 4,425,249 - PS417_20400 0.20 +1.0 4,425,339 + PS417_20400 0.27 +0.6 4,425,339 + PS417_20400 0.27 -0.3 4,425,339 + PS417_20400 0.27 +0.4 4,425,339 + PS417_20400 0.27 +0.5 4,425,340 - PS417_20400 0.28 +0.3 4,425,340 - PS417_20400 0.28 +0.2 4,425,344 + PS417_20400 0.28 +0.9 4,425,344 + PS417_20400 0.28 +0.3 4,425,345 - PS417_20400 0.28 +0.1 4,425,467 + PS417_20400 0.38 -0.1
Or see this region's nucleotide sequence