Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4544 and EX28DRAFT_4545 are separated by 15 nucleotides EX28DRAFT_4545 and EX28DRAFT_4546 are separated by 472 nucleotides
EX28DRAFT_4544: EX28DRAFT_4544 - phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 25,859 to 27,151
_4544
EX28DRAFT_4545: EX28DRAFT_4545 - AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful), at 27,167 to 28,756
_4545
EX28DRAFT_4546: EX28DRAFT_4546 - hypothetical protein, at 29,229 to 29,335
_4546
Position (kb) 27
28
29 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 27.169 kb on - strand at 28.041 kb on + strand, within EX28DRAFT_4545 at 28.041 kb on + strand, within EX28DRAFT_4545 at 28.782 kb on - strand at 28.782 kb on - strand at 28.782 kb on - strand at 28.794 kb on - strand at 28.794 kb on - strand at 28.794 kb on - strand at 28.846 kb on - strand at 28.849 kb on - strand at 28.932 kb on - strand at 28.942 kb on - strand at 29.129 kb on + strand at 29.132 kb on + strand at 29.134 kb on + strand at 29.134 kb on + strand at 29.134 kb on + strand at 29.134 kb on + strand at 29.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 27,169 - +0.5 28,041 + EX28DRAFT_4545 0.55 -1.7 28,041 + EX28DRAFT_4545 0.55 -0.2 28,782 - -4.9 28,782 - -2.1 28,782 - -4.1 28,794 - -2.4 28,794 - +1.1 28,794 - +0.5 28,846 - +0.6 28,849 - -0.2 28,932 - +0.9 28,942 - -1.7 29,129 + +0.5 29,132 + +0.1 29,134 + +0.4 29,134 + -1.4 29,134 + -1.8 29,134 + +2.2 29,189 - -2.7
Or see this region's nucleotide sequence