Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4396 and EX28DRAFT_4397 are separated by 0 nucleotides EX28DRAFT_4397 and EX28DRAFT_4398 are separated by 96 nucleotides EX28DRAFT_4398 and EX28DRAFT_4399 are separated by 173 nucleotides
EX28DRAFT_4396: EX28DRAFT_4396 - Predicted membrane protein, at 59,091 to 59,510
_4396
EX28DRAFT_4397: EX28DRAFT_4397 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 59,511 to 60,257
_4397
EX28DRAFT_4398: EX28DRAFT_4398 - fructose-1,6-bisphosphatase, class II, at 60,354 to 61,364
_4398
EX28DRAFT_4399: EX28DRAFT_4399 - glycerol kinase, at 61,538 to 63,046
_4399
Position (kb) 60
61
62 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 59.476 kb on - strand at 59.519 kb on - strand at 59.535 kb on - strand at 59.694 kb on + strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.807 kb on - strand, within EX28DRAFT_4397 at 59.889 kb on - strand, within EX28DRAFT_4397 at 59.896 kb on + strand, within EX28DRAFT_4397 at 59.897 kb on - strand, within EX28DRAFT_4397 at 60.061 kb on + strand, within EX28DRAFT_4397 at 60.061 kb on + strand, within EX28DRAFT_4397 at 60.062 kb on - strand, within EX28DRAFT_4397 at 60.097 kb on + strand, within EX28DRAFT_4397 at 60.186 kb on + strand at 60.186 kb on + strand at 60.187 kb on - strand at 60.187 kb on - strand at 60.197 kb on + strand at 60.197 kb on + strand at 60.198 kb on - strand at 60.198 kb on - strand at 60.222 kb on + strand at 60.286 kb on + strand at 60.286 kb on + strand at 60.287 kb on - strand at 60.295 kb on + strand at 60.296 kb on - strand at 60.398 kb on - strand at 60.572 kb on + strand, within EX28DRAFT_4398 at 60.894 kb on - strand, within EX28DRAFT_4398 at 61.009 kb on + strand, within EX28DRAFT_4398 at 61.009 kb on + strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.010 kb on - strand, within EX28DRAFT_4398 at 61.013 kb on + strand, within EX28DRAFT_4398 at 61.121 kb on + strand, within EX28DRAFT_4398 at 61.122 kb on - strand, within EX28DRAFT_4398 at 61.122 kb on - strand, within EX28DRAFT_4398 at 61.125 kb on + strand, within EX28DRAFT_4398 at 61.165 kb on + strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.166 kb on - strand, within EX28DRAFT_4398 at 61.301 kb on + strand at 61.301 kb on + strand at 61.301 kb on + strand at 61.302 kb on - strand at 61.302 kb on - strand at 61.302 kb on - strand at 61.487 kb on - strand at 61.539 kb on + strand at 61.607 kb on - strand at 61.799 kb on - strand, within EX28DRAFT_4399 at 61.887 kb on + strand, within EX28DRAFT_4399 at 62.016 kb on + strand, within EX28DRAFT_4399 at 62.016 kb on + strand, within EX28DRAFT_4399 at 62.016 kb on + strand, within EX28DRAFT_4399 at 62.017 kb on - strand, within EX28DRAFT_4399 at 62.053 kb on - strand, within EX28DRAFT_4399 at 62.145 kb on + strand, within EX28DRAFT_4399 at 62.233 kb on + strand, within EX28DRAFT_4399 at 62.233 kb on + strand, within EX28DRAFT_4399 at 62.250 kb on + strand, within EX28DRAFT_4399 at 62.250 kb on + strand, within EX28DRAFT_4399 at 62.250 kb on + strand, within EX28DRAFT_4399 at 62.251 kb on - strand, within EX28DRAFT_4399 at 62.363 kb on - strand, within EX28DRAFT_4399
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 59,476 - +0.2 59,519 - -0.4 59,535 - -1.6 59,694 + EX28DRAFT_4397 0.24 -0.5 59,807 - EX28DRAFT_4397 0.40 +0.2 59,807 - EX28DRAFT_4397 0.40 -1.3 59,889 - EX28DRAFT_4397 0.51 +5.6 59,896 + EX28DRAFT_4397 0.52 +0.7 59,897 - EX28DRAFT_4397 0.52 -1.3 60,061 + EX28DRAFT_4397 0.74 -1.1 60,061 + EX28DRAFT_4397 0.74 -3.3 60,062 - EX28DRAFT_4397 0.74 +0.1 60,097 + EX28DRAFT_4397 0.78 -0.3 60,186 + -0.0 60,186 + -1.1 60,187 - -0.5 60,187 - -0.7 60,197 + +0.6 60,197 + +0.2 60,198 - -0.5 60,198 - +1.7 60,222 + +1.9 60,286 + +0.9 60,286 + -4.6 60,287 - -0.0 60,295 + +0.0 60,296 - +0.1 60,398 - +0.3 60,572 + EX28DRAFT_4398 0.22 +0.1 60,894 - EX28DRAFT_4398 0.53 -0.9 61,009 + EX28DRAFT_4398 0.65 +1.1 61,009 + EX28DRAFT_4398 0.65 +1.1 61,010 - EX28DRAFT_4398 0.65 +0.8 61,010 - EX28DRAFT_4398 0.65 +0.6 61,010 - EX28DRAFT_4398 0.65 +0.5 61,010 - EX28DRAFT_4398 0.65 -2.3 61,010 - EX28DRAFT_4398 0.65 +1.3 61,013 + EX28DRAFT_4398 0.65 +1.4 61,121 + EX28DRAFT_4398 0.76 -1.7 61,122 - EX28DRAFT_4398 0.76 -0.4 61,122 - EX28DRAFT_4398 0.76 +0.7 61,125 + EX28DRAFT_4398 0.76 +0.0 61,165 + EX28DRAFT_4398 0.80 -4.8 61,166 - EX28DRAFT_4398 0.80 +1.4 61,166 - EX28DRAFT_4398 0.80 -0.4 61,166 - EX28DRAFT_4398 0.80 +0.0 61,301 + +0.7 61,301 + +2.3 61,301 + +0.5 61,302 - -1.0 61,302 - +0.2 61,302 - -0.2 61,487 - -0.1 61,539 + -0.1 61,607 - +2.3 61,799 - EX28DRAFT_4399 0.17 -0.3 61,887 + EX28DRAFT_4399 0.23 -0.7 62,016 + EX28DRAFT_4399 0.32 +0.7 62,016 + EX28DRAFT_4399 0.32 +0.4 62,016 + EX28DRAFT_4399 0.32 +0.2 62,017 - EX28DRAFT_4399 0.32 -1.1 62,053 - EX28DRAFT_4399 0.34 -3.3 62,145 + EX28DRAFT_4399 0.40 -2.1 62,233 + EX28DRAFT_4399 0.46 -1.2 62,233 + EX28DRAFT_4399 0.46 -2.3 62,250 + EX28DRAFT_4399 0.47 +1.5 62,250 + EX28DRAFT_4399 0.47 -0.2 62,250 + EX28DRAFT_4399 0.47 -0.5 62,251 - EX28DRAFT_4399 0.47 +2.2 62,363 - EX28DRAFT_4399 0.55 +0.9
Or see this region's nucleotide sequence