Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4226 and EX28DRAFT_4228 are separated by 175 nucleotides EX28DRAFT_4228 and EX28DRAFT_4229 overlap by 3 nucleotides EX28DRAFT_4229 and EX28DRAFT_4230 are separated by 121 nucleotides
EX28DRAFT_4226: EX28DRAFT_4226 - formate dehydrogenase alpha subunit (EC 1.2.1.2), at 32,467 to 34,614
_4226
EX28DRAFT_4228: EX28DRAFT_4228 - RNA, at 34,790 to 34,940
_4228
EX28DRAFT_4229: EX28DRAFT_4229 - Hok/gef family, at 34,938 to 35,090
_4229
EX28DRAFT_4230: EX28DRAFT_4230 - Sel1 repeat, at 35,212 to 35,886
_4230
Position (kb) 34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.004 kb on - strand at 34.015 kb on + strand at 34.039 kb on + strand at 34.090 kb on + strand at 34.099 kb on - strand at 34.183 kb on + strand at 34.286 kb on - strand at 34.426 kb on + strand at 34.427 kb on - strand at 34.427 kb on - strand at 34.472 kb on + strand at 34.472 kb on + strand at 34.472 kb on + strand at 34.473 kb on - strand at 34.500 kb on + strand at 34.501 kb on - strand at 34.555 kb on + strand at 34.555 kb on + strand at 34.570 kb on + strand at 34.572 kb on + strand at 34.650 kb on + strand at 34.930 kb on + strand at 34.930 kb on + strand at 34.974 kb on - strand, within EX28DRAFT_4229 at 35.142 kb on + strand at 35.176 kb on + strand at 35.177 kb on - strand at 35.203 kb on + strand at 35.204 kb on - strand at 35.221 kb on - strand at 35.244 kb on + strand at 35.323 kb on + strand, within EX28DRAFT_4230 at 35.334 kb on + strand, within EX28DRAFT_4230 at 35.335 kb on - strand, within EX28DRAFT_4230 at 35.338 kb on + strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.339 kb on - strand, within EX28DRAFT_4230 at 35.463 kb on + strand, within EX28DRAFT_4230 at 35.622 kb on - strand, within EX28DRAFT_4230 at 35.784 kb on + strand, within EX28DRAFT_4230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 34,004 - +1.3 34,015 + +0.6 34,039 + -1.2 34,090 + -0.0 34,099 - -1.4 34,183 + +0.2 34,286 - +0.9 34,426 + +1.6 34,427 - -3.2 34,427 - -1.1 34,472 + -1.5 34,472 + -0.2 34,472 + +0.7 34,473 - +0.8 34,500 + +1.8 34,501 - +1.0 34,555 + +0.7 34,555 + +1.4 34,570 + +0.2 34,572 + -0.3 34,650 + -0.5 34,930 + +0.8 34,930 + -3.6 34,974 - EX28DRAFT_4229 0.24 +0.4 35,142 + +0.8 35,176 + -0.3 35,177 - +0.5 35,203 + +0.1 35,204 - -3.2 35,221 - -0.3 35,244 + +0.6 35,323 + EX28DRAFT_4230 0.16 -1.3 35,334 + EX28DRAFT_4230 0.18 +0.3 35,335 - EX28DRAFT_4230 0.18 -0.0 35,338 + EX28DRAFT_4230 0.19 -0.6 35,339 - EX28DRAFT_4230 0.19 -1.5 35,339 - EX28DRAFT_4230 0.19 +0.1 35,339 - EX28DRAFT_4230 0.19 -0.6 35,339 - EX28DRAFT_4230 0.19 -3.7 35,339 - EX28DRAFT_4230 0.19 -2.7 35,339 - EX28DRAFT_4230 0.19 -0.1 35,339 - EX28DRAFT_4230 0.19 +0.4 35,339 - EX28DRAFT_4230 0.19 +0.0 35,463 + EX28DRAFT_4230 0.37 +0.7 35,622 - EX28DRAFT_4230 0.61 -0.4 35,784 + EX28DRAFT_4230 0.85 -0.5
Or see this region's nucleotide sequence