Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4197 and EX28DRAFT_4198 are separated by 595 nucleotides EX28DRAFT_4198 and EX28DRAFT_4199 are separated by 80 nucleotides EX28DRAFT_4199 and EX28DRAFT_4200 are separated by 136 nucleotides
EX28DRAFT_4197: EX28DRAFT_4197 - Dynamin family, at 5,277 to 7,631
_4197
EX28DRAFT_4198: EX28DRAFT_4198 - alkylphosphonate utilization operon protein PhnA, at 8,227 to 8,562
_4198
EX28DRAFT_4199: EX28DRAFT_4199 - Uncharacterized protein conserved in bacteria, at 8,643 to 9,080
_4199
EX28DRAFT_4200: EX28DRAFT_4200 - phosphonate ABC transporter, ATP-binding protein, at 9,217 to 10,005
_4200
Position (kb) 8
9 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 7.227 kb on - strand, within EX28DRAFT_4197 at 7.227 kb on - strand, within EX28DRAFT_4197 at 7.413 kb on + strand at 7.413 kb on + strand at 7.506 kb on - strand at 7.508 kb on + strand at 7.557 kb on - strand at 7.581 kb on + strand at 7.635 kb on - strand at 7.635 kb on - strand at 7.669 kb on - strand at 7.685 kb on + strand at 7.689 kb on + strand at 7.689 kb on + strand at 7.689 kb on + strand at 7.690 kb on - strand at 7.690 kb on - strand at 7.705 kb on - strand at 7.793 kb on - strand at 7.793 kb on - strand at 7.793 kb on - strand at 7.793 kb on - strand at 7.843 kb on - strand at 7.859 kb on + strand at 7.869 kb on - strand at 7.872 kb on + strand at 7.893 kb on - strand at 7.896 kb on - strand at 7.896 kb on - strand at 7.913 kb on + strand at 7.942 kb on + strand at 7.942 kb on + strand at 7.942 kb on + strand at 7.943 kb on - strand at 7.943 kb on - strand at 8.049 kb on - strand at 8.049 kb on - strand at 8.049 kb on - strand at 8.059 kb on + strand at 8.060 kb on - strand at 8.148 kb on + strand at 8.149 kb on - strand at 8.149 kb on - strand at 8.182 kb on + strand at 8.182 kb on + strand at 8.182 kb on + strand at 8.183 kb on - strand at 8.183 kb on - strand at 8.226 kb on + strand at 8.269 kb on + strand, within EX28DRAFT_4198 at 8.269 kb on + strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.270 kb on - strand, within EX28DRAFT_4198 at 8.277 kb on + strand, within EX28DRAFT_4198 at 8.405 kb on + strand, within EX28DRAFT_4198 at 8.405 kb on + strand, within EX28DRAFT_4198 at 8.406 kb on - strand, within EX28DRAFT_4198 at 8.494 kb on - strand, within EX28DRAFT_4198 at 8.565 kb on + strand at 8.607 kb on - strand at 8.607 kb on - strand at 8.612 kb on + strand at 8.642 kb on + strand at 8.650 kb on + strand at 8.659 kb on - strand at 8.730 kb on + strand, within EX28DRAFT_4199 at 8.730 kb on + strand, within EX28DRAFT_4199 at 8.731 kb on - strand, within EX28DRAFT_4199 at 8.732 kb on + strand, within EX28DRAFT_4199 at 8.732 kb on + strand, within EX28DRAFT_4199 at 9.032 kb on + strand, within EX28DRAFT_4199 at 9.036 kb on + strand, within EX28DRAFT_4199 at 9.036 kb on + strand, within EX28DRAFT_4199 at 9.037 kb on - strand at 9.057 kb on - strand at 9.199 kb on + strand at 9.200 kb on - strand at 9.268 kb on - strand at 9.365 kb on + strand, within EX28DRAFT_4200 at 9.365 kb on + strand, within EX28DRAFT_4200 at 9.365 kb on + strand, within EX28DRAFT_4200 at 9.376 kb on - strand, within EX28DRAFT_4200 at 9.484 kb on + strand, within EX28DRAFT_4200
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 7,227 - EX28DRAFT_4197 0.83 -0.0 7,227 - EX28DRAFT_4197 0.83 -0.5 7,413 + -0.5 7,413 + -2.7 7,506 - -0.5 7,508 + +0.0 7,557 - -0.7 7,581 + -0.4 7,635 - +0.8 7,635 - +1.0 7,669 - +1.6 7,685 + -0.1 7,689 + +0.1 7,689 + -1.2 7,689 + +1.0 7,690 - +1.0 7,690 - +1.1 7,705 - +0.4 7,793 - +1.4 7,793 - +0.8 7,793 - +1.6 7,793 - +0.2 7,843 - -0.1 7,859 + -1.6 7,869 - +1.5 7,872 + +0.1 7,893 - +1.2 7,896 - +0.3 7,896 - +1.9 7,913 + -1.1 7,942 + +3.3 7,942 + -3.3 7,942 + -3.9 7,943 - +0.3 7,943 - +1.1 8,049 - +0.7 8,049 - +1.0 8,049 - +1.1 8,059 + -0.7 8,060 - +0.8 8,148 + -3.6 8,149 - -0.2 8,149 - -1.4 8,182 + +0.8 8,182 + +1.5 8,182 + +0.9 8,183 - +0.6 8,183 - +1.2 8,226 + -4.8 8,269 + EX28DRAFT_4198 0.12 +1.1 8,269 + EX28DRAFT_4198 0.12 +1.1 8,270 - EX28DRAFT_4198 0.13 +0.9 8,270 - EX28DRAFT_4198 0.13 +1.4 8,270 - EX28DRAFT_4198 0.13 +1.5 8,270 - EX28DRAFT_4198 0.13 +0.5 8,270 - EX28DRAFT_4198 0.13 +1.6 8,277 + EX28DRAFT_4198 0.15 +0.5 8,405 + EX28DRAFT_4198 0.53 +0.4 8,405 + EX28DRAFT_4198 0.53 +0.8 8,406 - EX28DRAFT_4198 0.53 +0.5 8,494 - EX28DRAFT_4198 0.79 +0.3 8,565 + -0.4 8,607 - -0.1 8,607 - +0.7 8,612 + -0.3 8,642 + +2.9 8,650 + -0.0 8,659 - -0.7 8,730 + EX28DRAFT_4199 0.20 -1.4 8,730 + EX28DRAFT_4199 0.20 +0.7 8,731 - EX28DRAFT_4199 0.20 +0.3 8,732 + EX28DRAFT_4199 0.20 +0.2 8,732 + EX28DRAFT_4199 0.20 -2.8 9,032 + EX28DRAFT_4199 0.89 -2.8 9,036 + EX28DRAFT_4199 0.90 -0.5 9,036 + EX28DRAFT_4199 0.90 +1.0 9,037 - +0.1 9,057 - +0.2 9,199 + -2.1 9,200 - +0.4 9,268 - +0.7 9,365 + EX28DRAFT_4200 0.19 +0.4 9,365 + EX28DRAFT_4200 0.19 +0.6 9,365 + EX28DRAFT_4200 0.19 -0.2 9,376 - EX28DRAFT_4200 0.20 +0.5 9,484 + EX28DRAFT_4200 0.34 +1.6
Or see this region's nucleotide sequence