Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4172 and EX28DRAFT_4173 are separated by 311 nucleotides EX28DRAFT_4173 and EX28DRAFT_4174 are separated by 66 nucleotides EX28DRAFT_4174 and EX28DRAFT_4175 are separated by 30 nucleotides EX28DRAFT_4175 and EX28DRAFT_4176 overlap by 4 nucleotides
EX28DRAFT_4172: EX28DRAFT_4172 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 156,294 to 156,926
_4172
EX28DRAFT_4173: EX28DRAFT_4173 - Predicted redox protein, regulator of disulfide bond formation, at 157,238 to 157,642
_4173
EX28DRAFT_4174: EX28DRAFT_4174 - Phosphoribulokinase, at 157,709 to 158,578
_4174
EX28DRAFT_4175: EX28DRAFT_4175 - Uncharacterized protein conserved in bacteria, at 158,609 to 158,827
_4175
EX28DRAFT_4176: EX28DRAFT_4176 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 158,824 to 159,846
_4176
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 157.070 kb on - strand at 157.078 kb on - strand at 157.092 kb on - strand at 157.119 kb on - strand at 157.571 kb on + strand, within EX28DRAFT_4173 at 157.571 kb on + strand, within EX28DRAFT_4173 at 157.572 kb on - strand, within EX28DRAFT_4173 at 157.622 kb on + strand at 157.799 kb on + strand, within EX28DRAFT_4174 at 157.804 kb on + strand, within EX28DRAFT_4174 at 157.804 kb on + strand, within EX28DRAFT_4174 at 157.804 kb on + strand, within EX28DRAFT_4174 at 157.805 kb on - strand, within EX28DRAFT_4174 at 157.805 kb on - strand, within EX28DRAFT_4174 at 157.805 kb on - strand, within EX28DRAFT_4174 at 157.805 kb on - strand, within EX28DRAFT_4174 at 157.820 kb on - strand, within EX28DRAFT_4174 at 157.942 kb on + strand, within EX28DRAFT_4174 at 157.943 kb on - strand, within EX28DRAFT_4174 at 157.947 kb on - strand, within EX28DRAFT_4174 at 158.005 kb on + strand, within EX28DRAFT_4174 at 158.005 kb on + strand, within EX28DRAFT_4174 at 158.005 kb on + strand, within EX28DRAFT_4174 at 158.010 kb on + strand, within EX28DRAFT_4174 at 158.010 kb on + strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.278 kb on - strand, within EX28DRAFT_4174 at 158.377 kb on - strand, within EX28DRAFT_4174 at 158.578 kb on + strand at 158.578 kb on + strand at 158.579 kb on - strand at 158.579 kb on - strand at 158.579 kb on - strand at 158.579 kb on - strand at 158.701 kb on + strand, within EX28DRAFT_4175 at 158.765 kb on + strand, within EX28DRAFT_4175 at 158.766 kb on - strand, within EX28DRAFT_4175 at 158.766 kb on - strand, within EX28DRAFT_4175 at 159.021 kb on + strand, within EX28DRAFT_4176 at 159.021 kb on + strand, within EX28DRAFT_4176 at 159.078 kb on - strand, within EX28DRAFT_4176 at 159.440 kb on - strand, within EX28DRAFT_4176 at 159.440 kb on - strand, within EX28DRAFT_4176 at 159.477 kb on - strand, within EX28DRAFT_4176
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 157,070 - +1.7 157,078 - -2.7 157,092 - -3.0 157,119 - +0.1 157,571 + EX28DRAFT_4173 0.82 +1.1 157,571 + EX28DRAFT_4173 0.82 +1.0 157,572 - EX28DRAFT_4173 0.82 -1.0 157,622 + -4.0 157,799 + EX28DRAFT_4174 0.10 -0.6 157,804 + EX28DRAFT_4174 0.11 -0.8 157,804 + EX28DRAFT_4174 0.11 +1.1 157,804 + EX28DRAFT_4174 0.11 -1.6 157,805 - EX28DRAFT_4174 0.11 -1.9 157,805 - EX28DRAFT_4174 0.11 -0.3 157,805 - EX28DRAFT_4174 0.11 -0.5 157,805 - EX28DRAFT_4174 0.11 -0.4 157,820 - EX28DRAFT_4174 0.13 -0.2 157,942 + EX28DRAFT_4174 0.27 +1.3 157,943 - EX28DRAFT_4174 0.27 -0.8 157,947 - EX28DRAFT_4174 0.27 -0.1 158,005 + EX28DRAFT_4174 0.34 +0.3 158,005 + EX28DRAFT_4174 0.34 +0.7 158,005 + EX28DRAFT_4174 0.34 -1.4 158,010 + EX28DRAFT_4174 0.35 -0.0 158,010 + EX28DRAFT_4174 0.35 -0.5 158,278 - EX28DRAFT_4174 0.65 -0.8 158,278 - EX28DRAFT_4174 0.65 -0.4 158,278 - EX28DRAFT_4174 0.65 +0.3 158,278 - EX28DRAFT_4174 0.65 -1.3 158,278 - EX28DRAFT_4174 0.65 -2.3 158,377 - EX28DRAFT_4174 0.77 +0.3 158,578 + +0.0 158,578 + -0.4 158,579 - -0.1 158,579 - -2.9 158,579 - -0.1 158,579 - -0.3 158,701 + EX28DRAFT_4175 0.42 -1.4 158,765 + EX28DRAFT_4175 0.71 -2.1 158,766 - EX28DRAFT_4175 0.72 -0.3 158,766 - EX28DRAFT_4175 0.72 +1.2 159,021 + EX28DRAFT_4176 0.19 -2.1 159,021 + EX28DRAFT_4176 0.19 +0.1 159,078 - EX28DRAFT_4176 0.25 +0.1 159,440 - EX28DRAFT_4176 0.60 -3.2 159,440 - EX28DRAFT_4176 0.60 +0.4 159,477 - EX28DRAFT_4176 0.64 +0.3
Or see this region's nucleotide sequence