Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4054

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4053 and EX28DRAFT_4054 are separated by 60 nucleotidesEX28DRAFT_4054 and EX28DRAFT_4055 are separated by 260 nucleotides EX28DRAFT_4053: EX28DRAFT_4053 - Uncharacterized protein involved in outer membrane biogenesis, at 24,987 to 27,029 _4053 EX28DRAFT_4054: EX28DRAFT_4054 - metabolite-proton symporter, at 27,090 to 28,412 _4054 EX28DRAFT_4055: EX28DRAFT_4055 - inner membrane protein YhjD, at 28,673 to 29,698 _4055 Position (kb) 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 26.117 kb on + strand, within EX28DRAFT_4053at 26.252 kb on + strand, within EX28DRAFT_4053at 26.447 kb on - strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.620 kb on - strand, within EX28DRAFT_4053at 26.622 kb on - strand, within EX28DRAFT_4053at 26.714 kb on - strand, within EX28DRAFT_4053at 26.714 kb on - strand, within EX28DRAFT_4053at 26.845 kb on - strandat 26.845 kb on - strandat 27.005 kb on + strandat 27.028 kb on - strandat 27.028 kb on - strandat 27.092 kb on - strandat 27.163 kb on + strandat 27.176 kb on - strandat 27.187 kb on + strandat 27.188 kb on - strandat 27.214 kb on + strandat 27.214 kb on + strandat 27.214 kb on + strandat 27.384 kb on - strand, within EX28DRAFT_4054at 27.551 kb on + strand, within EX28DRAFT_4054at 27.599 kb on + strand, within EX28DRAFT_4054at 27.605 kb on - strand, within EX28DRAFT_4054at 27.619 kb on + strand, within EX28DRAFT_4054at 27.619 kb on + strand, within EX28DRAFT_4054at 27.620 kb on - strand, within EX28DRAFT_4054at 27.620 kb on - strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.772 kb on + strand, within EX28DRAFT_4054at 27.806 kb on + strand, within EX28DRAFT_4054at 28.063 kb on + strand, within EX28DRAFT_4054at 28.064 kb on - strand, within EX28DRAFT_4054at 28.064 kb on - strand, within EX28DRAFT_4054at 28.291 kb on + strandat 28.292 kb on - strandat 28.292 kb on - strandat 28.292 kb on - strandat 28.296 kb on - strandat 28.296 kb on - strandat 28.298 kb on - strandat 28.349 kb on + strandat 28.415 kb on + strandat 28.424 kb on - strandat 28.450 kb on - strandat 28.768 kb on - strandat 28.842 kb on + strand, within EX28DRAFT_4055at 28.962 kb on + strand, within EX28DRAFT_4055at 28.962 kb on + strand, within EX28DRAFT_4055at 28.962 kb on + strand, within EX28DRAFT_4055at 28.963 kb on - strand, within EX28DRAFT_4055at 28.963 kb on - strand, within EX28DRAFT_4055at 29.025 kb on + strand, within EX28DRAFT_4055at 29.025 kb on + strand, within EX28DRAFT_4055at 29.026 kb on - strand, within EX28DRAFT_4055at 29.034 kb on + strand, within EX28DRAFT_4055at 29.035 kb on - strand, within EX28DRAFT_4055at 29.080 kb on + strand, within EX28DRAFT_4055at 29.118 kb on - strand, within EX28DRAFT_4055at 29.142 kb on + strand, within EX28DRAFT_4055at 29.146 kb on + strand, within EX28DRAFT_4055at 29.176 kb on + strand, within EX28DRAFT_4055at 29.247 kb on + strand, within EX28DRAFT_4055at 29.284 kb on + strand, within EX28DRAFT_4055at 29.350 kb on + strand, within EX28DRAFT_4055at 29.350 kb on + strand, within EX28DRAFT_4055at 29.371 kb on + strand, within EX28DRAFT_4055

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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26,117 + EX28DRAFT_4053 0.55 +1.8
26,252 + EX28DRAFT_4053 0.62 +0.2
26,447 - EX28DRAFT_4053 0.71 +1.0
26,619 + EX28DRAFT_4053 0.80 -0.6
26,619 + EX28DRAFT_4053 0.80 +1.1
26,619 + EX28DRAFT_4053 0.80 +1.6
26,619 + EX28DRAFT_4053 0.80 +0.5
26,620 - EX28DRAFT_4053 0.80 +0.7
26,622 - EX28DRAFT_4053 0.80 +2.0
26,714 - EX28DRAFT_4053 0.85 -1.3
26,714 - EX28DRAFT_4053 0.85 +0.1
26,845 - -1.0
26,845 - -0.1
27,005 + +1.2
27,028 - +1.2
27,028 - +0.6
27,092 - +1.1
27,163 + -1.6
27,176 - +0.5
27,187 + -1.1
27,188 - -0.1
27,214 + -2.7
27,214 + +0.5
27,214 + +0.3
27,384 - EX28DRAFT_4054 0.22 +0.1
27,551 + EX28DRAFT_4054 0.35 +0.1
27,599 + EX28DRAFT_4054 0.38 -0.7
27,605 - EX28DRAFT_4054 0.39 -0.5
27,619 + EX28DRAFT_4054 0.40 -2.4
27,619 + EX28DRAFT_4054 0.40 +0.0
27,620 - EX28DRAFT_4054 0.40 +0.4
27,620 - EX28DRAFT_4054 0.40 -0.9
27,631 + EX28DRAFT_4054 0.41 +0.9
27,631 + EX28DRAFT_4054 0.41 -0.2
27,631 + EX28DRAFT_4054 0.41 +0.6
27,632 - EX28DRAFT_4054 0.41 +1.1
27,632 - EX28DRAFT_4054 0.41 +0.6
27,632 - EX28DRAFT_4054 0.41 +0.4
27,772 + EX28DRAFT_4054 0.52 +0.6
27,806 + EX28DRAFT_4054 0.54 +0.2
28,063 + EX28DRAFT_4054 0.74 -0.9
28,064 - EX28DRAFT_4054 0.74 +0.8
28,064 - EX28DRAFT_4054 0.74 +0.2
28,291 + -0.3
28,292 - -0.1
28,292 - -2.1
28,292 - -0.1
28,296 - -0.3
28,296 - +0.2
28,298 - -0.4
28,349 + +0.8
28,415 + +0.6
28,424 - -0.2
28,450 - +0.0
28,768 - +1.1
28,842 + EX28DRAFT_4055 0.16 +0.7
28,962 + EX28DRAFT_4055 0.28 +0.5
28,962 + EX28DRAFT_4055 0.28 -1.8
28,962 + EX28DRAFT_4055 0.28 +0.6
28,963 - EX28DRAFT_4055 0.28 +1.0
28,963 - EX28DRAFT_4055 0.28 +0.3
29,025 + EX28DRAFT_4055 0.34 -0.2
29,025 + EX28DRAFT_4055 0.34 +1.8
29,026 - EX28DRAFT_4055 0.34 +0.9
29,034 + EX28DRAFT_4055 0.35 +0.8
29,035 - EX28DRAFT_4055 0.35 -4.5
29,080 + EX28DRAFT_4055 0.40 -0.2
29,118 - EX28DRAFT_4055 0.43 +1.2
29,142 + EX28DRAFT_4055 0.46 +0.8
29,146 + EX28DRAFT_4055 0.46 +0.6
29,176 + EX28DRAFT_4055 0.49 +0.2
29,247 + EX28DRAFT_4055 0.56 -0.3
29,284 + EX28DRAFT_4055 0.60 +0.8
29,350 + EX28DRAFT_4055 0.66 +0.5
29,350 + EX28DRAFT_4055 0.66 +1.2
29,371 + EX28DRAFT_4055 0.68 +1.8

Or see this region's nucleotide sequence