Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3902 and EX28DRAFT_3903 are separated by 225 nucleotides EX28DRAFT_3903 and EX28DRAFT_3904 are separated by 119 nucleotides
EX28DRAFT_3902: EX28DRAFT_3902 - sodium--glutamate symport carrier (gltS), at 111,013 to 112,215
_3902
EX28DRAFT_3903: EX28DRAFT_3903 - uracil-xanthine permease, at 112,441 to 113,832
_3903
EX28DRAFT_3904: EX28DRAFT_3904 - AsmA family, at 113,952 to 115,655
_3904
Position (kb) 112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 111.583 kb on - strand, within EX28DRAFT_3902 at 111.583 kb on - strand, within EX28DRAFT_3902 at 111.583 kb on - strand, within EX28DRAFT_3902 at 112.026 kb on + strand, within EX28DRAFT_3902 at 112.026 kb on + strand, within EX28DRAFT_3902 at 112.026 kb on + strand, within EX28DRAFT_3902 at 112.027 kb on - strand, within EX28DRAFT_3902 at 112.027 kb on - strand, within EX28DRAFT_3902 at 112.215 kb on + strand at 112.216 kb on - strand at 112.216 kb on - strand at 112.244 kb on + strand at 112.330 kb on - strand at 112.457 kb on + strand at 112.457 kb on + strand at 112.653 kb on + strand, within EX28DRAFT_3903 at 112.701 kb on + strand, within EX28DRAFT_3903 at 112.731 kb on - strand, within EX28DRAFT_3903 at 112.756 kb on - strand, within EX28DRAFT_3903 at 112.756 kb on - strand, within EX28DRAFT_3903 at 113.067 kb on + strand, within EX28DRAFT_3903 at 113.067 kb on + strand, within EX28DRAFT_3903 at 113.068 kb on - strand, within EX28DRAFT_3903 at 113.354 kb on - strand, within EX28DRAFT_3903 at 113.853 kb on - strand at 113.873 kb on - strand at 113.873 kb on - strand at 113.873 kb on - strand at 113.876 kb on + strand at 113.876 kb on + strand at 113.876 kb on + strand at 113.877 kb on - strand at 113.877 kb on - strand at 113.877 kb on - strand at 113.905 kb on + strand at 113.917 kb on - strand at 113.925 kb on + strand at 113.925 kb on + strand at 113.925 kb on + strand at 113.926 kb on - strand at 113.979 kb on + strand at 113.980 kb on - strand at 113.980 kb on - strand at 114.019 kb on - strand at 114.138 kb on - strand, within EX28DRAFT_3904 at 114.171 kb on - strand, within EX28DRAFT_3904 at 114.242 kb on + strand, within EX28DRAFT_3904 at 114.243 kb on - strand, within EX28DRAFT_3904 at 114.336 kb on - strand, within EX28DRAFT_3904 at 114.518 kb on + strand, within EX28DRAFT_3904 at 114.538 kb on + strand, within EX28DRAFT_3904 at 114.693 kb on - strand, within EX28DRAFT_3904 at 114.776 kb on - strand, within EX28DRAFT_3904
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 111,583 - EX28DRAFT_3902 0.47 -2.5 111,583 - EX28DRAFT_3902 0.47 +1.5 111,583 - EX28DRAFT_3902 0.47 +0.5 112,026 + EX28DRAFT_3902 0.84 -0.4 112,026 + EX28DRAFT_3902 0.84 -1.0 112,026 + EX28DRAFT_3902 0.84 +0.7 112,027 - EX28DRAFT_3902 0.84 -0.5 112,027 - EX28DRAFT_3902 0.84 +1.5 112,215 + +0.5 112,216 - -2.2 112,216 - -3.4 112,244 + -0.2 112,330 - +0.3 112,457 + +0.8 112,457 + +0.2 112,653 + EX28DRAFT_3903 0.15 -1.3 112,701 + EX28DRAFT_3903 0.19 -0.5 112,731 - EX28DRAFT_3903 0.21 -0.2 112,756 - EX28DRAFT_3903 0.23 -0.0 112,756 - EX28DRAFT_3903 0.23 +0.8 113,067 + EX28DRAFT_3903 0.45 +0.4 113,067 + EX28DRAFT_3903 0.45 -1.3 113,068 - EX28DRAFT_3903 0.45 -0.2 113,354 - EX28DRAFT_3903 0.66 +0.6 113,853 - +0.1 113,873 - +0.8 113,873 - -0.1 113,873 - -2.9 113,876 + -0.4 113,876 + +0.2 113,876 + -1.2 113,877 - -2.9 113,877 - +2.4 113,877 - -0.4 113,905 + -3.0 113,917 - +1.7 113,925 + -0.7 113,925 + +1.0 113,925 + -3.4 113,926 - +0.3 113,979 + +1.3 113,980 - +1.1 113,980 - -0.2 114,019 - -2.4 114,138 - EX28DRAFT_3904 0.11 -2.8 114,171 - EX28DRAFT_3904 0.13 +0.2 114,242 + EX28DRAFT_3904 0.17 -1.5 114,243 - EX28DRAFT_3904 0.17 +0.3 114,336 - EX28DRAFT_3904 0.23 -0.0 114,518 + EX28DRAFT_3904 0.33 +0.0 114,538 + EX28DRAFT_3904 0.34 +0.9 114,693 - EX28DRAFT_3904 0.43 -0.1 114,776 - EX28DRAFT_3904 0.48 +0.3
Or see this region's nucleotide sequence