Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3785 and EX28DRAFT_3786 are separated by 40 nucleotides EX28DRAFT_3786 and EX28DRAFT_3787 overlap by 8 nucleotides EX28DRAFT_3787 and EX28DRAFT_3788 are separated by 188 nucleotides
EX28DRAFT_3785: EX28DRAFT_3785 - lipoprotein, YaeC family, at 466,548 to 467,363
_3785
EX28DRAFT_3786: EX28DRAFT_3786 - ABC-type metal ion transport system, permease component, at 467,404 to 468,057
_3786
EX28DRAFT_3787: EX28DRAFT_3787 - D-methionine ABC transporter, ATP-binding protein, at 468,050 to 469,081
_3787
EX28DRAFT_3788: EX28DRAFT_3788 - D,D-heptose 1,7-bisphosphate phosphatase, at 469,270 to 469,836
_3788
Position (kb) 468
469
470 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 467.061 kb on - strand, within EX28DRAFT_3785 at 467.092 kb on + strand, within EX28DRAFT_3785 at 467.092 kb on + strand, within EX28DRAFT_3785 at 467.100 kb on - strand, within EX28DRAFT_3785 at 467.158 kb on + strand, within EX28DRAFT_3785 at 467.158 kb on + strand, within EX28DRAFT_3785 at 467.194 kb on + strand, within EX28DRAFT_3785 at 467.194 kb on + strand, within EX28DRAFT_3785 at 467.195 kb on - strand, within EX28DRAFT_3785 at 467.264 kb on + strand, within EX28DRAFT_3785 at 467.331 kb on + strand at 467.332 kb on - strand at 467.350 kb on - strand at 467.355 kb on - strand at 467.374 kb on + strand at 467.399 kb on + strand at 467.405 kb on + strand at 467.456 kb on + strand at 467.456 kb on + strand at 467.505 kb on + strand, within EX28DRAFT_3786 at 467.505 kb on + strand, within EX28DRAFT_3786 at 467.506 kb on - strand, within EX28DRAFT_3786 at 467.506 kb on - strand, within EX28DRAFT_3786 at 467.507 kb on + strand, within EX28DRAFT_3786 at 467.515 kb on - strand, within EX28DRAFT_3786 at 467.517 kb on - strand, within EX28DRAFT_3786 at 467.764 kb on + strand, within EX28DRAFT_3786 at 467.765 kb on - strand, within EX28DRAFT_3786 at 467.863 kb on - strand, within EX28DRAFT_3786 at 467.863 kb on - strand, within EX28DRAFT_3786 at 467.943 kb on - strand, within EX28DRAFT_3786 at 467.943 kb on - strand, within EX28DRAFT_3786 at 467.943 kb on - strand, within EX28DRAFT_3786 at 467.951 kb on - strand, within EX28DRAFT_3786 at 468.057 kb on + strand at 468.058 kb on - strand at 468.077 kb on + strand at 468.078 kb on - strand at 468.078 kb on - strand at 468.175 kb on - strand, within EX28DRAFT_3787 at 468.407 kb on + strand, within EX28DRAFT_3787 at 468.408 kb on - strand, within EX28DRAFT_3787 at 468.490 kb on + strand, within EX28DRAFT_3787 at 468.490 kb on + strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.491 kb on - strand, within EX28DRAFT_3787 at 468.493 kb on + strand, within EX28DRAFT_3787 at 468.493 kb on + strand, within EX28DRAFT_3787 at 468.494 kb on - strand, within EX28DRAFT_3787 at 468.599 kb on + strand, within EX28DRAFT_3787 at 468.676 kb on + strand, within EX28DRAFT_3787 at 468.896 kb on + strand, within EX28DRAFT_3787 at 468.952 kb on + strand, within EX28DRAFT_3787 at 468.953 kb on - strand, within EX28DRAFT_3787 at 469.087 kb on + strand at 469.098 kb on + strand at 469.098 kb on + strand at 469.098 kb on + strand at 469.099 kb on - strand at 469.099 kb on - strand at 469.107 kb on + strand at 469.182 kb on - strand at 469.377 kb on - strand, within EX28DRAFT_3788 at 469.819 kb on - strand at 469.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 467,061 - EX28DRAFT_3785 0.63 +0.2 467,092 + EX28DRAFT_3785 0.67 -3.7 467,092 + EX28DRAFT_3785 0.67 +0.1 467,100 - EX28DRAFT_3785 0.68 +0.7 467,158 + EX28DRAFT_3785 0.75 -0.0 467,158 + EX28DRAFT_3785 0.75 -1.9 467,194 + EX28DRAFT_3785 0.79 -0.0 467,194 + EX28DRAFT_3785 0.79 +1.0 467,195 - EX28DRAFT_3785 0.79 -0.4 467,264 + EX28DRAFT_3785 0.88 -2.3 467,331 + +0.1 467,332 - -0.5 467,350 - +1.5 467,355 - -0.9 467,374 + +0.5 467,399 + +0.9 467,405 + -0.4 467,456 + -2.5 467,456 + -1.8 467,505 + EX28DRAFT_3786 0.15 -1.1 467,505 + EX28DRAFT_3786 0.15 -0.6 467,506 - EX28DRAFT_3786 0.16 -0.2 467,506 - EX28DRAFT_3786 0.16 -0.1 467,507 + EX28DRAFT_3786 0.16 +0.5 467,515 - EX28DRAFT_3786 0.17 -3.9 467,517 - EX28DRAFT_3786 0.17 +0.1 467,764 + EX28DRAFT_3786 0.55 +0.1 467,765 - EX28DRAFT_3786 0.55 -0.4 467,863 - EX28DRAFT_3786 0.70 +0.8 467,863 - EX28DRAFT_3786 0.70 +0.5 467,943 - EX28DRAFT_3786 0.82 -0.3 467,943 - EX28DRAFT_3786 0.82 -2.6 467,943 - EX28DRAFT_3786 0.82 +0.1 467,951 - EX28DRAFT_3786 0.84 +0.8 468,057 + -0.4 468,058 - -0.1 468,077 + -0.2 468,078 - +0.6 468,078 - +0.4 468,175 - EX28DRAFT_3787 0.12 +0.3 468,407 + EX28DRAFT_3787 0.35 +0.8 468,408 - EX28DRAFT_3787 0.35 +1.5 468,490 + EX28DRAFT_3787 0.43 -0.0 468,490 + EX28DRAFT_3787 0.43 -0.2 468,491 - EX28DRAFT_3787 0.43 -0.5 468,491 - EX28DRAFT_3787 0.43 -2.1 468,491 - EX28DRAFT_3787 0.43 -1.9 468,491 - EX28DRAFT_3787 0.43 +0.4 468,493 + EX28DRAFT_3787 0.43 +2.0 468,493 + EX28DRAFT_3787 0.43 -0.3 468,494 - EX28DRAFT_3787 0.43 -0.9 468,599 + EX28DRAFT_3787 0.53 +0.4 468,676 + EX28DRAFT_3787 0.61 -0.7 468,896 + EX28DRAFT_3787 0.82 +0.3 468,952 + EX28DRAFT_3787 0.87 +0.6 468,953 - EX28DRAFT_3787 0.88 -1.4 469,087 + -0.4 469,098 + +0.6 469,098 + -0.8 469,098 + +0.0 469,099 - -0.9 469,099 - +0.1 469,107 + +1.1 469,182 - -4.7 469,377 - EX28DRAFT_3788 0.19 -2.2 469,819 - +0.5 469,911 - -1.4
Or see this region's nucleotide sequence