Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3774 and EX28DRAFT_3775 are separated by 65 nucleotides EX28DRAFT_3775 and EX28DRAFT_3776 are separated by 58 nucleotides
EX28DRAFT_3774: EX28DRAFT_3774 - Arginine/lysine/ornithine decarboxylases, at 457,148 to 459,280
_3774
EX28DRAFT_3775: EX28DRAFT_3775 - Lactoylglutathione lyase and related lyases, at 459,346 to 459,735
_3775
EX28DRAFT_3776: EX28DRAFT_3776 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 459,794 to 461,083
_3776
Position (kb) 459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 458.373 kb on + strand, within EX28DRAFT_3774 at 458.373 kb on + strand, within EX28DRAFT_3774 at 458.374 kb on - strand, within EX28DRAFT_3774 at 458.596 kb on + strand, within EX28DRAFT_3774 at 458.596 kb on + strand, within EX28DRAFT_3774 at 458.597 kb on - strand, within EX28DRAFT_3774 at 458.597 kb on - strand, within EX28DRAFT_3774 at 458.597 kb on - strand, within EX28DRAFT_3774 at 458.597 kb on - strand, within EX28DRAFT_3774 at 458.597 kb on - strand, within EX28DRAFT_3774 at 458.597 kb on - strand, within EX28DRAFT_3774 at 458.739 kb on - strand, within EX28DRAFT_3774 at 458.852 kb on - strand, within EX28DRAFT_3774 at 458.888 kb on + strand, within EX28DRAFT_3774 at 458.986 kb on - strand, within EX28DRAFT_3774 at 459.332 kb on - strand at 459.332 kb on - strand at 459.345 kb on + strand at 459.345 kb on + strand at 459.345 kb on + strand at 459.346 kb on - strand at 459.346 kb on - strand at 459.346 kb on - strand at 459.346 kb on - strand at 459.346 kb on - strand at 459.357 kb on - strand at 459.372 kb on + strand at 459.435 kb on + strand, within EX28DRAFT_3775 at 459.435 kb on + strand, within EX28DRAFT_3775 at 459.436 kb on - strand, within EX28DRAFT_3775 at 459.505 kb on + strand, within EX28DRAFT_3775 at 459.506 kb on - strand, within EX28DRAFT_3775 at 459.506 kb on - strand, within EX28DRAFT_3775 at 459.506 kb on - strand, within EX28DRAFT_3775 at 459.733 kb on + strand at 459.734 kb on - strand at 459.779 kb on + strand at 459.785 kb on + strand at 459.793 kb on + strand at 459.801 kb on + strand at 459.802 kb on - strand at 459.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 458,373 + EX28DRAFT_3774 0.57 -0.1 458,373 + EX28DRAFT_3774 0.57 +0.4 458,374 - EX28DRAFT_3774 0.57 -0.2 458,596 + EX28DRAFT_3774 0.68 -0.3 458,596 + EX28DRAFT_3774 0.68 -0.3 458,597 - EX28DRAFT_3774 0.68 +0.3 458,597 - EX28DRAFT_3774 0.68 +0.4 458,597 - EX28DRAFT_3774 0.68 -0.2 458,597 - EX28DRAFT_3774 0.68 -0.4 458,597 - EX28DRAFT_3774 0.68 +0.9 458,597 - EX28DRAFT_3774 0.68 +0.5 458,739 - EX28DRAFT_3774 0.75 -4.4 458,852 - EX28DRAFT_3774 0.80 +1.5 458,888 + EX28DRAFT_3774 0.82 +0.1 458,986 - EX28DRAFT_3774 0.86 -0.1 459,332 - -1.2 459,332 - -2.8 459,345 + +0.0 459,345 + -0.5 459,345 + +1.4 459,346 - +2.0 459,346 - +0.8 459,346 - +0.1 459,346 - -3.3 459,346 - -0.1 459,357 - -0.3 459,372 + +0.3 459,435 + EX28DRAFT_3775 0.23 -2.9 459,435 + EX28DRAFT_3775 0.23 -0.5 459,436 - EX28DRAFT_3775 0.23 -1.2 459,505 + EX28DRAFT_3775 0.41 -1.1 459,506 - EX28DRAFT_3775 0.41 -2.0 459,506 - EX28DRAFT_3775 0.41 -1.4 459,506 - EX28DRAFT_3775 0.41 -1.9 459,733 + -0.2 459,734 - +0.2 459,779 + +0.1 459,785 + -0.2 459,793 + +1.3 459,801 + +0.3 459,802 - -2.0 459,802 - -2.2
Or see this region's nucleotide sequence