Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3717 and EX28DRAFT_3718 are separated by 0 nucleotides EX28DRAFT_3718 and EX28DRAFT_3719 are separated by 114 nucleotides EX28DRAFT_3719 and EX28DRAFT_3720 are separated by 67 nucleotides
EX28DRAFT_3717: EX28DRAFT_3717 - S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form, at 392,417 to 393,211
_3717
EX28DRAFT_3718: EX28DRAFT_3718 - spermidine synthase, at 393,212 to 394,081
_3718
EX28DRAFT_3719: EX28DRAFT_3719 - Bacterial chaperone lipoprotein (PulS_OutS), at 394,196 to 394,582
_3719
EX28DRAFT_3720: EX28DRAFT_3720 - Putative multicopper oxidases, at 394,650 to 396,257
_3720
Position (kb) 394
395 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 393.199 kb on + strand at 393.226 kb on + strand at 393.249 kb on + strand at 393.274 kb on + strand at 393.292 kb on - strand at 393.347 kb on + strand, within EX28DRAFT_3718 at 393.347 kb on + strand, within EX28DRAFT_3718 at 393.348 kb on - strand, within EX28DRAFT_3718 at 393.402 kb on + strand, within EX28DRAFT_3718 at 393.402 kb on + strand, within EX28DRAFT_3718 at 393.403 kb on - strand, within EX28DRAFT_3718 at 393.447 kb on + strand, within EX28DRAFT_3718 at 393.448 kb on - strand, within EX28DRAFT_3718 at 393.559 kb on - strand, within EX28DRAFT_3718 at 393.571 kb on + strand, within EX28DRAFT_3718 at 393.619 kb on + strand, within EX28DRAFT_3718 at 393.619 kb on + strand, within EX28DRAFT_3718 at 393.696 kb on + strand, within EX28DRAFT_3718 at 393.696 kb on + strand, within EX28DRAFT_3718 at 393.697 kb on - strand, within EX28DRAFT_3718 at 393.724 kb on - strand, within EX28DRAFT_3718 at 393.767 kb on - strand, within EX28DRAFT_3718 at 393.767 kb on - strand, within EX28DRAFT_3718 at 393.895 kb on - strand, within EX28DRAFT_3718 at 393.898 kb on + strand, within EX28DRAFT_3718 at 393.899 kb on - strand, within EX28DRAFT_3718 at 393.899 kb on - strand, within EX28DRAFT_3718 at 393.899 kb on - strand, within EX28DRAFT_3718 at 394.006 kb on - strand at 394.006 kb on - strand at 394.029 kb on + strand at 394.029 kb on + strand at 394.099 kb on + strand at 394.099 kb on + strand at 394.100 kb on - strand at 394.111 kb on - strand at 394.139 kb on + strand at 394.144 kb on - strand at 394.144 kb on - strand at 394.144 kb on - strand at 394.198 kb on - strand at 394.453 kb on + strand, within EX28DRAFT_3719 at 394.482 kb on + strand, within EX28DRAFT_3719 at 394.483 kb on - strand, within EX28DRAFT_3719 at 394.551 kb on - strand at 394.582 kb on + strand at 394.582 kb on + strand at 394.583 kb on - strand at 394.583 kb on - strand at 394.583 kb on - strand at 394.583 kb on - strand at 394.745 kb on - strand at 395.349 kb on + strand, within EX28DRAFT_3720 at 395.350 kb on - strand, within EX28DRAFT_3720 at 395.452 kb on - strand, within EX28DRAFT_3720 at 395.546 kb on + strand, within EX28DRAFT_3720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 393,199 + +0.0 393,226 + +0.8 393,249 + +0.7 393,274 + -0.5 393,292 - +0.3 393,347 + EX28DRAFT_3718 0.16 +1.5 393,347 + EX28DRAFT_3718 0.16 -0.9 393,348 - EX28DRAFT_3718 0.16 +1.3 393,402 + EX28DRAFT_3718 0.22 -0.7 393,402 + EX28DRAFT_3718 0.22 -0.6 393,403 - EX28DRAFT_3718 0.22 +2.8 393,447 + EX28DRAFT_3718 0.27 -2.2 393,448 - EX28DRAFT_3718 0.27 -2.7 393,559 - EX28DRAFT_3718 0.40 +0.9 393,571 + EX28DRAFT_3718 0.41 -1.3 393,619 + EX28DRAFT_3718 0.47 +1.5 393,619 + EX28DRAFT_3718 0.47 -2.8 393,696 + EX28DRAFT_3718 0.56 -0.6 393,696 + EX28DRAFT_3718 0.56 +0.7 393,697 - EX28DRAFT_3718 0.56 -0.1 393,724 - EX28DRAFT_3718 0.59 +1.6 393,767 - EX28DRAFT_3718 0.64 +1.1 393,767 - EX28DRAFT_3718 0.64 -0.8 393,895 - EX28DRAFT_3718 0.79 -0.4 393,898 + EX28DRAFT_3718 0.79 +0.7 393,899 - EX28DRAFT_3718 0.79 -0.1 393,899 - EX28DRAFT_3718 0.79 -0.6 393,899 - EX28DRAFT_3718 0.79 +0.6 394,006 - -2.6 394,006 - -0.4 394,029 + -1.8 394,029 + -2.2 394,099 + -1.4 394,099 + +0.0 394,100 - -1.2 394,111 - -4.8 394,139 + +0.7 394,144 - +0.3 394,144 - +0.2 394,144 - +0.0 394,198 - -2.1 394,453 + EX28DRAFT_3719 0.66 -1.8 394,482 + EX28DRAFT_3719 0.74 -1.2 394,483 - EX28DRAFT_3719 0.74 -1.4 394,551 - -2.2 394,582 + +0.4 394,582 + +1.3 394,583 - -0.6 394,583 - -0.2 394,583 - -0.6 394,583 - -3.4 394,745 - +1.4 395,349 + EX28DRAFT_3720 0.43 -0.9 395,350 - EX28DRAFT_3720 0.44 -3.1 395,452 - EX28DRAFT_3720 0.50 -3.9 395,546 + EX28DRAFT_3720 0.56 +1.2
Or see this region's nucleotide sequence