Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3506 and EX28DRAFT_3507 are separated by 21 nucleotides EX28DRAFT_3507 and EX28DRAFT_3508 are separated by 185 nucleotides EX28DRAFT_3508 and EX28DRAFT_3509 are separated by 88 nucleotides EX28DRAFT_3509 and EX28DRAFT_3510 are separated by 135 nucleotides
EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301
_3506
EX28DRAFT_3507: EX28DRAFT_3507 - Response regulator, at 173,323 to 173,922
_3507
EX28DRAFT_3508: EX28DRAFT_3508 - Lactoylglutathione lyase and related lyases, at 174,108 to 174,494
_3508
EX28DRAFT_3509: EX28DRAFT_3509 - Protease subunit of ATP-dependent Clp proteases, at 174,583 to 175,185
_3509
EX28DRAFT_3510: EX28DRAFT_3510 - Uncharacterized conserved protein, at 175,321 to 176,442
_3510
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.153 kb on - strand at 173.325 kb on - strand at 173.539 kb on - strand, within EX28DRAFT_3507 at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.991 kb on + strand at 174.033 kb on + strand at 174.033 kb on + strand at 174.039 kb on + strand at 174.039 kb on + strand at 174.064 kb on - strand at 174.064 kb on - strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.109 kb on + strand at 174.359 kb on + strand, within EX28DRAFT_3508 at 174.363 kb on - strand, within EX28DRAFT_3508 at 174.363 kb on - strand, within EX28DRAFT_3508 at 174.400 kb on + strand, within EX28DRAFT_3508 at 174.489 kb on - strand at 174.494 kb on + strand at 174.495 kb on - strand at 174.495 kb on - strand at 174.543 kb on + strand at 174.578 kb on + strand at 174.578 kb on + strand at 174.589 kb on + strand at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.772 kb on + strand, within EX28DRAFT_3509 at 174.773 kb on - strand, within EX28DRAFT_3509 at 174.936 kb on + strand, within EX28DRAFT_3509 at 175.235 kb on - strand at 175.284 kb on - strand at 175.285 kb on + strand at 175.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 173,153 - -0.6 173,325 - +0.7 173,539 - EX28DRAFT_3507 0.36 -0.3 173,906 + -0.0 173,906 + -0.3 173,906 + -0.7 173,906 + -0.7 173,906 + +0.1 173,991 + -0.1 174,033 + -0.3 174,033 + +0.3 174,039 + -2.8 174,039 + -1.1 174,064 - +0.3 174,064 - -0.3 174,071 + +0.0 174,071 + +1.2 174,071 + -3.1 174,109 + -1.6 174,359 + EX28DRAFT_3508 0.65 +2.5 174,363 - EX28DRAFT_3508 0.66 -0.2 174,363 - EX28DRAFT_3508 0.66 +0.7 174,400 + EX28DRAFT_3508 0.75 -0.2 174,489 - +1.3 174,494 + -1.3 174,495 - +0.5 174,495 - +1.0 174,543 + +0.7 174,578 + -0.0 174,578 + +0.4 174,589 + -2.3 174,772 + EX28DRAFT_3509 0.31 +0.7 174,772 + EX28DRAFT_3509 0.31 +0.0 174,772 + EX28DRAFT_3509 0.31 -1.0 174,773 - EX28DRAFT_3509 0.32 -1.9 174,936 + EX28DRAFT_3509 0.59 +0.5 175,235 - -0.2 175,284 - +0.0 175,285 + +0.6 175,285 + -0.5
Or see this region's nucleotide sequence