Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3458 and EX28DRAFT_3459 are separated by 194 nucleotides EX28DRAFT_3459 and EX28DRAFT_3460 are separated by 1 nucleotides EX28DRAFT_3460 and EX28DRAFT_3461 are separated by 264 nucleotides
EX28DRAFT_3458: EX28DRAFT_3458 - transcriptional regulator, IclR family, at 132,848 to 133,606
_3458
EX28DRAFT_3459: EX28DRAFT_3459 - Protein of unknown function (DUF3828), at 133,801 to 134,253
_3459
EX28DRAFT_3460: EX28DRAFT_3460 - hypothetical protein, at 134,255 to 134,617
_3460
EX28DRAFT_3461: EX28DRAFT_3461 - ornithine carbamoyltransferase, at 134,882 to 135,886
_3461
Position (kb) 134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 133.272 kb on + strand, within EX28DRAFT_3458 at 133.272 kb on + strand, within EX28DRAFT_3458 at 133.272 kb on + strand, within EX28DRAFT_3458 at 133.273 kb on - strand, within EX28DRAFT_3458 at 133.273 kb on - strand, within EX28DRAFT_3458 at 133.451 kb on - strand, within EX28DRAFT_3458 at 133.452 kb on + strand, within EX28DRAFT_3458 at 133.453 kb on - strand, within EX28DRAFT_3458 at 133.453 kb on - strand, within EX28DRAFT_3458 at 133.493 kb on - strand, within EX28DRAFT_3458 at 133.535 kb on - strand at 133.607 kb on - strand at 133.776 kb on + strand at 133.788 kb on + strand at 133.813 kb on - strand at 133.862 kb on - strand, within EX28DRAFT_3459 at 133.888 kb on + strand, within EX28DRAFT_3459 at 133.894 kb on + strand, within EX28DRAFT_3459 at 133.894 kb on + strand, within EX28DRAFT_3459 at 133.895 kb on - strand, within EX28DRAFT_3459 at 133.925 kb on + strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.926 kb on - strand, within EX28DRAFT_3459 at 133.927 kb on + strand, within EX28DRAFT_3459 at 133.927 kb on + strand, within EX28DRAFT_3459 at 133.969 kb on + strand, within EX28DRAFT_3459 at 133.970 kb on - strand, within EX28DRAFT_3459 at 134.096 kb on + strand, within EX28DRAFT_3459 at 134.104 kb on + strand, within EX28DRAFT_3459 at 134.340 kb on + strand, within EX28DRAFT_3460 at 134.366 kb on - strand, within EX28DRAFT_3460 at 134.408 kb on - strand, within EX28DRAFT_3460 at 134.524 kb on + strand, within EX28DRAFT_3460 at 134.605 kb on + strand at 134.762 kb on - strand at 134.871 kb on - strand at 134.914 kb on + strand at 135.198 kb on + strand, within EX28DRAFT_3461 at 135.199 kb on - strand, within EX28DRAFT_3461 at 135.202 kb on + strand, within EX28DRAFT_3461 at 135.203 kb on - strand, within EX28DRAFT_3461 at 135.571 kb on - strand, within EX28DRAFT_3461
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 133,272 + EX28DRAFT_3458 0.56 -0.1 133,272 + EX28DRAFT_3458 0.56 -1.4 133,272 + EX28DRAFT_3458 0.56 +2.6 133,273 - EX28DRAFT_3458 0.56 +0.2 133,273 - EX28DRAFT_3458 0.56 +0.0 133,451 - EX28DRAFT_3458 0.79 +0.1 133,452 + EX28DRAFT_3458 0.80 -3.2 133,453 - EX28DRAFT_3458 0.80 -0.2 133,453 - EX28DRAFT_3458 0.80 -0.1 133,493 - EX28DRAFT_3458 0.85 -0.5 133,535 - +1.1 133,607 - -1.5 133,776 + -0.5 133,788 + -0.6 133,813 - +1.2 133,862 - EX28DRAFT_3459 0.13 +0.5 133,888 + EX28DRAFT_3459 0.19 -2.2 133,894 + EX28DRAFT_3459 0.21 +0.4 133,894 + EX28DRAFT_3459 0.21 -0.8 133,895 - EX28DRAFT_3459 0.21 +1.5 133,925 + EX28DRAFT_3459 0.27 +0.8 133,926 - EX28DRAFT_3459 0.28 +0.8 133,926 - EX28DRAFT_3459 0.28 +0.5 133,926 - EX28DRAFT_3459 0.28 +0.4 133,927 + EX28DRAFT_3459 0.28 -3.5 133,927 + EX28DRAFT_3459 0.28 +0.8 133,969 + EX28DRAFT_3459 0.37 -2.1 133,970 - EX28DRAFT_3459 0.37 -0.1 134,096 + EX28DRAFT_3459 0.65 +0.3 134,104 + EX28DRAFT_3459 0.67 +0.1 134,340 + EX28DRAFT_3460 0.23 -1.1 134,366 - EX28DRAFT_3460 0.31 -0.2 134,408 - EX28DRAFT_3460 0.42 -0.5 134,524 + EX28DRAFT_3460 0.74 -0.9 134,605 + +0.7 134,762 - -0.1 134,871 - -1.8 134,914 + +0.8 135,198 + EX28DRAFT_3461 0.31 -1.3 135,199 - EX28DRAFT_3461 0.32 -1.4 135,202 + EX28DRAFT_3461 0.32 -2.6 135,203 - EX28DRAFT_3461 0.32 -2.0 135,571 - EX28DRAFT_3461 0.69 -1.4
Or see this region's nucleotide sequence