Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3342 and EX28DRAFT_3343 are separated by 40 nucleotides EX28DRAFT_3343 and EX28DRAFT_3344 are separated by 58 nucleotides EX28DRAFT_3344 and EX28DRAFT_3345 are separated by 108 nucleotides EX28DRAFT_3345 and EX28DRAFT_3346 are separated by 37 nucleotides EX28DRAFT_3346 and EX28DRAFT_3347 are separated by 189 nucleotides EX28DRAFT_3347 and EX28DRAFT_3348 are separated by 27 nucleotides
EX28DRAFT_3342: EX28DRAFT_3342 - EF-P beta-lysylation protein EpmB, at 12,696 to 13,724
_3342
EX28DRAFT_3343: EX28DRAFT_3343 - translation elongation factor P, at 13,765 to 14,331
_3343
EX28DRAFT_3344: EX28DRAFT_3344 - Predicted small secreted protein, at 14,390 to 14,521
_3344
EX28DRAFT_3345: EX28DRAFT_3345 - Predicted small secreted protein, at 14,630 to 14,776
_3345
EX28DRAFT_3346: EX28DRAFT_3346 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 14,814 to 15,413
_3346
EX28DRAFT_3347: EX28DRAFT_3347 - RNA, at 15,603 to 15,647
_3347
EX28DRAFT_3348: EX28DRAFT_3348 - Membrane transporters of cations and cationic drugs, at 15,675 to 15,992
_3348
Position (kb) 14
15 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 14.479 kb on + strand, within EX28DRAFT_3344 at 14.480 kb on - strand, within EX28DRAFT_3344 at 14.497 kb on + strand, within EX28DRAFT_3344 at 14.497 kb on + strand, within EX28DRAFT_3344 at 14.519 kb on + strand at 14.594 kb on + strand at 14.595 kb on - strand at 14.615 kb on + strand at 14.616 kb on - strand at 14.626 kb on + strand at 14.629 kb on + strand at 14.629 kb on + strand at 14.630 kb on - strand at 14.630 kb on - strand at 14.630 kb on - strand at 14.630 kb on - strand at 14.695 kb on + strand, within EX28DRAFT_3345 at 14.698 kb on + strand, within EX28DRAFT_3345 at 14.761 kb on + strand, within EX28DRAFT_3345 at 14.774 kb on + strand at 14.775 kb on - strand at 14.778 kb on + strand at 14.783 kb on + strand at 14.784 kb on - strand at 14.784 kb on - strand at 14.784 kb on - strand at 14.785 kb on - strand at 14.893 kb on + strand, within EX28DRAFT_3346 at 14.893 kb on + strand, within EX28DRAFT_3346 at 14.893 kb on + strand, within EX28DRAFT_3346 at 14.894 kb on - strand, within EX28DRAFT_3346 at 14.897 kb on + strand, within EX28DRAFT_3346 at 14.897 kb on + strand, within EX28DRAFT_3346 at 14.897 kb on + strand, within EX28DRAFT_3346 at 14.898 kb on - strand, within EX28DRAFT_3346 at 14.898 kb on - strand, within EX28DRAFT_3346 at 14.898 kb on - strand, within EX28DRAFT_3346 at 14.898 kb on - strand, within EX28DRAFT_3346 at 14.899 kb on + strand, within EX28DRAFT_3346 at 14.900 kb on - strand, within EX28DRAFT_3346 at 14.900 kb on - strand, within EX28DRAFT_3346 at 15.222 kb on - strand, within EX28DRAFT_3346 at 15.322 kb on + strand, within EX28DRAFT_3346 at 15.322 kb on + strand, within EX28DRAFT_3346 at 15.413 kb on + strand at 15.471 kb on + strand at 15.471 kb on + strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.514 kb on - strand at 15.523 kb on - strand at 15.534 kb on + strand at 15.584 kb on + strand at 15.654 kb on + strand at 15.654 kb on + strand at 15.655 kb on - strand at 15.657 kb on + strand at 15.657 kb on + strand at 15.658 kb on - strand at 15.658 kb on - strand at 15.695 kb on + strand at 15.719 kb on - strand, within EX28DRAFT_3348 at 15.775 kb on + strand, within EX28DRAFT_3348 at 15.775 kb on + strand, within EX28DRAFT_3348
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 14,479 + EX28DRAFT_3344 0.67 +0.5 14,480 - EX28DRAFT_3344 0.68 +0.5 14,497 + EX28DRAFT_3344 0.81 -1.9 14,497 + EX28DRAFT_3344 0.81 -0.1 14,519 + -1.3 14,594 + +0.2 14,595 - +0.2 14,615 + -2.5 14,616 - -2.4 14,626 + -1.3 14,629 + +0.3 14,629 + +0.5 14,630 - -0.7 14,630 - -0.2 14,630 - -0.7 14,630 - +2.0 14,695 + EX28DRAFT_3345 0.44 -4.0 14,698 + EX28DRAFT_3345 0.46 -2.9 14,761 + EX28DRAFT_3345 0.89 -0.3 14,774 + -0.6 14,775 - -2.5 14,778 + -1.1 14,783 + +1.8 14,784 - +0.2 14,784 - +0.5 14,784 - +0.7 14,785 - -0.3 14,893 + EX28DRAFT_3346 0.13 -2.7 14,893 + EX28DRAFT_3346 0.13 +0.1 14,893 + EX28DRAFT_3346 0.13 +3.3 14,894 - EX28DRAFT_3346 0.13 -5.0 14,897 + EX28DRAFT_3346 0.14 -1.1 14,897 + EX28DRAFT_3346 0.14 +0.9 14,897 + EX28DRAFT_3346 0.14 +0.1 14,898 - EX28DRAFT_3346 0.14 -0.5 14,898 - EX28DRAFT_3346 0.14 +1.4 14,898 - EX28DRAFT_3346 0.14 -2.5 14,898 - EX28DRAFT_3346 0.14 -3.1 14,899 + EX28DRAFT_3346 0.14 -1.1 14,900 - EX28DRAFT_3346 0.14 -0.3 14,900 - EX28DRAFT_3346 0.14 -0.1 15,222 - EX28DRAFT_3346 0.68 -3.3 15,322 + EX28DRAFT_3346 0.85 -1.3 15,322 + EX28DRAFT_3346 0.85 -1.3 15,413 + +0.4 15,471 + -0.5 15,471 + -0.3 15,492 - -0.0 15,492 - +0.8 15,514 - +0.9 15,523 - -0.2 15,534 + -2.8 15,584 + +0.2 15,654 + +0.5 15,654 + -0.2 15,655 - -1.5 15,657 + +0.3 15,657 + +0.9 15,658 - +0.3 15,658 - +0.7 15,695 + +0.6 15,719 - EX28DRAFT_3348 0.14 +0.8 15,775 + EX28DRAFT_3348 0.31 -0.1 15,775 + EX28DRAFT_3348 0.31 +0.8
Or see this region's nucleotide sequence