Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3297 and EX28DRAFT_3298 overlap by 11 nucleotides EX28DRAFT_3298 and EX28DRAFT_3299 are separated by 9 nucleotides EX28DRAFT_3299 and EX28DRAFT_3300 overlap by 1 nucleotides
EX28DRAFT_3297: EX28DRAFT_3297 - ribonuclease, Rne/Rng family, at 597,204 to 598,673
_3297
EX28DRAFT_3298: EX28DRAFT_3298 - MAF protein, at 598,663 to 599,256
_3298
EX28DRAFT_3299: EX28DRAFT_3299 - rod shape-determining protein MreD, at 599,266 to 599,754
_3299
EX28DRAFT_3300: EX28DRAFT_3300 - rod shape-determining protein MreC, at 599,754 to 600,770
_3300
Position (kb) 598
599
600 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 597.896 kb on - strand, within EX28DRAFT_3297 at 597.928 kb on + strand, within EX28DRAFT_3297 at 598.300 kb on - strand, within EX28DRAFT_3297 at 598.305 kb on - strand, within EX28DRAFT_3297 at 598.305 kb on - strand, within EX28DRAFT_3297 at 598.457 kb on + strand, within EX28DRAFT_3297 at 598.470 kb on + strand, within EX28DRAFT_3297 at 598.501 kb on - strand, within EX28DRAFT_3297 at 598.525 kb on - strand, within EX28DRAFT_3297 at 598.554 kb on - strand at 598.563 kb on + strand at 598.622 kb on - strand at 598.647 kb on + strand at 598.673 kb on + strand at 598.674 kb on - strand at 598.722 kb on - strand at 598.846 kb on - strand, within EX28DRAFT_3298 at 598.847 kb on + strand, within EX28DRAFT_3298 at 598.848 kb on - strand, within EX28DRAFT_3298 at 598.874 kb on - strand, within EX28DRAFT_3298 at 599.046 kb on + strand, within EX28DRAFT_3298 at 599.047 kb on - strand, within EX28DRAFT_3298 at 599.127 kb on - strand, within EX28DRAFT_3298 at 599.244 kb on - strand at 599.256 kb on + strand at 599.268 kb on - strand at 599.268 kb on - strand at 599.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 597,896 - EX28DRAFT_3297 0.47 -3.4 597,928 + EX28DRAFT_3297 0.49 -5.0 598,300 - EX28DRAFT_3297 0.75 -2.9 598,305 - EX28DRAFT_3297 0.75 -3.4 598,305 - EX28DRAFT_3297 0.75 -4.7 598,457 + EX28DRAFT_3297 0.85 -4.3 598,470 + EX28DRAFT_3297 0.86 -3.1 598,501 - EX28DRAFT_3297 0.88 -1.1 598,525 - EX28DRAFT_3297 0.90 -3.4 598,554 - -0.9 598,563 + -1.9 598,622 - -1.0 598,647 + -5.1 598,673 + -2.3 598,674 - -3.1 598,722 - -2.4 598,846 - EX28DRAFT_3298 0.31 +0.8 598,847 + EX28DRAFT_3298 0.31 -1.3 598,848 - EX28DRAFT_3298 0.31 -3.0 598,874 - EX28DRAFT_3298 0.36 -0.3 599,046 + EX28DRAFT_3298 0.64 -0.5 599,047 - EX28DRAFT_3298 0.65 -4.1 599,127 - EX28DRAFT_3298 0.78 -0.1 599,244 - -1.4 599,256 + +0.8 599,268 - -0.8 599,268 - +0.4 599,296 - +0.2
Or see this region's nucleotide sequence