Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3292 and EX28DRAFT_3293 are separated by 7 nucleotides EX28DRAFT_3293 and EX28DRAFT_3294 are separated by 179 nucleotides EX28DRAFT_3294 and EX28DRAFT_3295 are separated by 77 nucleotides
EX28DRAFT_3292: EX28DRAFT_3292 - RND family efflux transporter, MFP subunit, at 589,501 to 590,433
_3292
EX28DRAFT_3293: EX28DRAFT_3293 - Protein of unknown function (DUF1656), at 590,441 to 590,644
_3293
EX28DRAFT_3294: EX28DRAFT_3294 - Transcriptional regulator, at 590,824 to 591,750
_3294
EX28DRAFT_3295: EX28DRAFT_3295 - Predicted Zn-dependent proteases and their inactivated homologs, at 591,828 to 593,273
_3295
Position (kb) 590
591
592 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 589.847 kb on + strand, within EX28DRAFT_3292 at 589.860 kb on - strand, within EX28DRAFT_3292 at 589.923 kb on - strand, within EX28DRAFT_3292 at 590.145 kb on - strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.147 kb on + strand, within EX28DRAFT_3292 at 590.263 kb on - strand, within EX28DRAFT_3292 at 590.342 kb on + strand at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.481 kb on + strand, within EX28DRAFT_3293 at 590.482 kb on - strand, within EX28DRAFT_3293 at 590.657 kb on - strand at 590.657 kb on - strand at 590.744 kb on + strand at 590.755 kb on - strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.756 kb on + strand at 590.780 kb on - strand at 590.780 kb on - strand at 590.783 kb on + strand at 591.036 kb on + strand, within EX28DRAFT_3294 at 591.037 kb on - strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.073 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294 at 591.126 kb on + strand, within EX28DRAFT_3294 at 591.535 kb on + strand, within EX28DRAFT_3294 at 591.536 kb on - strand, within EX28DRAFT_3294 at 591.634 kb on + strand, within EX28DRAFT_3294 at 591.635 kb on - strand, within EX28DRAFT_3294 at 591.666 kb on - strand at 591.675 kb on + strand at 591.675 kb on + strand at 591.675 kb on + strand at 591.676 kb on - strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.678 kb on + strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.679 kb on - strand at 591.682 kb on + strand at 591.682 kb on + strand at 591.683 kb on - strand at 591.694 kb on + strand at 591.695 kb on - strand at 591.748 kb on + strand at 591.829 kb on + strand at 592.042 kb on + strand, within EX28DRAFT_3295 at 592.043 kb on - strand, within EX28DRAFT_3295 at 592.174 kb on + strand, within EX28DRAFT_3295 at 592.174 kb on + strand, within EX28DRAFT_3295 at 592.175 kb on - strand, within EX28DRAFT_3295 at 592.182 kb on - strand, within EX28DRAFT_3295 at 592.210 kb on + strand, within EX28DRAFT_3295 at 592.279 kb on + strand, within EX28DRAFT_3295 at 592.280 kb on - strand, within EX28DRAFT_3295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 589,847 + EX28DRAFT_3292 0.37 +0.1 589,860 - EX28DRAFT_3292 0.38 +0.6 589,923 - EX28DRAFT_3292 0.45 -0.4 590,145 - EX28DRAFT_3292 0.69 -0.9 590,147 + EX28DRAFT_3292 0.69 +0.7 590,147 + EX28DRAFT_3292 0.69 +0.5 590,263 - EX28DRAFT_3292 0.82 -0.5 590,342 + +0.5 590,481 + EX28DRAFT_3293 0.20 -0.8 590,481 + EX28DRAFT_3293 0.20 -0.0 590,481 + EX28DRAFT_3293 0.20 +2.3 590,481 + EX28DRAFT_3293 0.20 -2.2 590,481 + EX28DRAFT_3293 0.20 -3.9 590,481 + EX28DRAFT_3293 0.20 +0.0 590,482 - EX28DRAFT_3293 0.20 -0.3 590,657 - -0.1 590,657 - +1.6 590,744 + -0.2 590,755 - -0.1 590,756 + +0.0 590,756 + -0.4 590,756 + -4.1 590,780 - -5.5 590,780 - +0.0 590,783 + +0.4 591,036 + EX28DRAFT_3294 0.23 -3.0 591,037 - EX28DRAFT_3294 0.23 +0.4 591,073 + EX28DRAFT_3294 0.27 -2.3 591,073 + EX28DRAFT_3294 0.27 +0.0 591,126 + EX28DRAFT_3294 0.33 -4.0 591,126 + EX28DRAFT_3294 0.33 -0.2 591,535 + EX28DRAFT_3294 0.77 -1.7 591,536 - EX28DRAFT_3294 0.77 +0.5 591,634 + EX28DRAFT_3294 0.87 -0.2 591,635 - EX28DRAFT_3294 0.87 -2.9 591,666 - -1.0 591,675 + +0.0 591,675 + +0.7 591,675 + +0.5 591,676 - -1.2 591,678 + +1.6 591,678 + +0.8 591,678 + +0.5 591,678 + -0.9 591,678 + +0.5 591,679 - -0.9 591,679 - -0.2 591,679 - -1.3 591,679 - -1.4 591,679 - -1.1 591,682 + -2.4 591,682 + +0.2 591,683 - +0.2 591,694 + -0.8 591,695 - +0.6 591,748 + -3.6 591,829 + -4.0 592,042 + EX28DRAFT_3295 0.15 -0.1 592,043 - EX28DRAFT_3295 0.15 -2.9 592,174 + EX28DRAFT_3295 0.24 +0.5 592,174 + EX28DRAFT_3295 0.24 +0.9 592,175 - EX28DRAFT_3295 0.24 +1.1 592,182 - EX28DRAFT_3295 0.24 -0.7 592,210 + EX28DRAFT_3295 0.26 +1.0 592,279 + EX28DRAFT_3295 0.31 +0.6 592,280 - EX28DRAFT_3295 0.31 -1.4
Or see this region's nucleotide sequence