Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3250 and EX28DRAFT_3251 are separated by 13 nucleotides EX28DRAFT_3251 and EX28DRAFT_3252 are separated by 14 nucleotides EX28DRAFT_3252 and EX28DRAFT_3253 overlap by 4 nucleotides
EX28DRAFT_3250: EX28DRAFT_3250 - K+-dependent Na+/Ca+ exchanger related-protein, at 543,706 to 544,683
_3250
EX28DRAFT_3251: EX28DRAFT_3251 - KpsF/GutQ family protein, at 544,697 to 545,683
_3251
EX28DRAFT_3252: EX28DRAFT_3252 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 545,698 to 546,264
_3252
EX28DRAFT_3253: EX28DRAFT_3253 - Uncharacterized protein conserved in bacteria, at 546,261 to 546,836
_3253
Position (kb) 544
545
546 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 543.714 kb on - strand at 543.714 kb on - strand at 543.714 kb on - strand at 543.732 kb on - strand at 543.754 kb on + strand at 543.755 kb on - strand at 543.786 kb on + strand at 543.786 kb on + strand at 543.786 kb on + strand at 543.786 kb on + strand at 543.787 kb on - strand at 543.787 kb on - strand at 543.914 kb on + strand, within EX28DRAFT_3250 at 543.914 kb on + strand, within EX28DRAFT_3250 at 543.914 kb on + strand, within EX28DRAFT_3250 at 543.914 kb on + strand, within EX28DRAFT_3250 at 543.945 kb on + strand, within EX28DRAFT_3250 at 543.945 kb on + strand, within EX28DRAFT_3250 at 543.946 kb on - strand, within EX28DRAFT_3250 at 543.947 kb on + strand, within EX28DRAFT_3250 at 543.947 kb on + strand, within EX28DRAFT_3250 at 543.947 kb on + strand, within EX28DRAFT_3250 at 544.038 kb on - strand, within EX28DRAFT_3250 at 544.058 kb on + strand, within EX28DRAFT_3250 at 544.063 kb on + strand, within EX28DRAFT_3250 at 544.081 kb on + strand, within EX28DRAFT_3250 at 544.082 kb on - strand, within EX28DRAFT_3250 at 544.129 kb on + strand, within EX28DRAFT_3250 at 544.129 kb on + strand, within EX28DRAFT_3250 at 544.129 kb on + strand, within EX28DRAFT_3250 at 544.130 kb on - strand, within EX28DRAFT_3250 at 544.130 kb on - strand, within EX28DRAFT_3250 at 544.132 kb on - strand, within EX28DRAFT_3250 at 544.132 kb on - strand, within EX28DRAFT_3250 at 544.132 kb on - strand, within EX28DRAFT_3250 at 544.137 kb on + strand, within EX28DRAFT_3250 at 544.313 kb on - strand, within EX28DRAFT_3250 at 544.431 kb on + strand, within EX28DRAFT_3250 at 544.432 kb on - strand, within EX28DRAFT_3250 at 544.434 kb on + strand, within EX28DRAFT_3250 at 544.451 kb on + strand, within EX28DRAFT_3250 at 544.451 kb on + strand, within EX28DRAFT_3250 at 544.451 kb on + strand, within EX28DRAFT_3250 at 544.451 kb on + strand, within EX28DRAFT_3250 at 544.452 kb on - strand, within EX28DRAFT_3250 at 544.452 kb on - strand, within EX28DRAFT_3250 at 544.455 kb on + strand, within EX28DRAFT_3250 at 544.455 kb on + strand, within EX28DRAFT_3250 at 544.544 kb on + strand, within EX28DRAFT_3250 at 544.544 kb on + strand, within EX28DRAFT_3250 at 544.545 kb on - strand, within EX28DRAFT_3250 at 544.633 kb on - strand at 544.637 kb on + strand at 544.696 kb on + strand at 544.696 kb on + strand at 544.696 kb on + strand at 544.696 kb on + strand at 544.696 kb on + strand at 544.697 kb on - strand at 544.697 kb on - strand at 544.708 kb on - strand at 544.785 kb on + strand at 544.785 kb on + strand at 544.830 kb on + strand, within EX28DRAFT_3251 at 544.831 kb on - strand, within EX28DRAFT_3251 at 544.939 kb on - strand, within EX28DRAFT_3251 at 545.320 kb on + strand, within EX28DRAFT_3251 at 545.323 kb on + strand, within EX28DRAFT_3251 at 545.323 kb on + strand, within EX28DRAFT_3251 at 545.410 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.602 kb on + strand at 545.602 kb on + strand at 545.646 kb on + strand at 545.646 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.676 kb on + strand at 545.681 kb on + strand at 545.681 kb on + strand at 545.824 kb on + strand, within EX28DRAFT_3252 at 545.937 kb on + strand, within EX28DRAFT_3252 at 545.937 kb on + strand, within EX28DRAFT_3252 at 546.061 kb on + strand, within EX28DRAFT_3252
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 543,714 - +0.4 543,714 - -4.2 543,714 - +0.7 543,732 - +0.7 543,754 + +0.7 543,755 - -1.1 543,786 + +0.2 543,786 + +0.2 543,786 + +0.8 543,786 + +0.8 543,787 - +0.3 543,787 - +0.7 543,914 + EX28DRAFT_3250 0.21 +0.7 543,914 + EX28DRAFT_3250 0.21 -0.7 543,914 + EX28DRAFT_3250 0.21 -0.1 543,914 + EX28DRAFT_3250 0.21 +0.8 543,945 + EX28DRAFT_3250 0.24 +0.0 543,945 + EX28DRAFT_3250 0.24 -1.7 543,946 - EX28DRAFT_3250 0.25 -1.6 543,947 + EX28DRAFT_3250 0.25 -3.8 543,947 + EX28DRAFT_3250 0.25 +0.3 543,947 + EX28DRAFT_3250 0.25 +1.0 544,038 - EX28DRAFT_3250 0.34 -0.5 544,058 + EX28DRAFT_3250 0.36 -0.5 544,063 + EX28DRAFT_3250 0.37 +0.2 544,081 + EX28DRAFT_3250 0.38 +0.0 544,082 - EX28DRAFT_3250 0.38 -4.2 544,129 + EX28DRAFT_3250 0.43 +0.7 544,129 + EX28DRAFT_3250 0.43 -3.3 544,129 + EX28DRAFT_3250 0.43 -2.6 544,130 - EX28DRAFT_3250 0.43 +0.0 544,130 - EX28DRAFT_3250 0.43 +1.4 544,132 - EX28DRAFT_3250 0.44 +0.5 544,132 - EX28DRAFT_3250 0.44 -1.7 544,132 - EX28DRAFT_3250 0.44 -0.1 544,137 + EX28DRAFT_3250 0.44 +0.9 544,313 - EX28DRAFT_3250 0.62 +0.2 544,431 + EX28DRAFT_3250 0.74 +1.3 544,432 - EX28DRAFT_3250 0.74 -0.5 544,434 + EX28DRAFT_3250 0.74 +1.0 544,451 + EX28DRAFT_3250 0.76 -0.1 544,451 + EX28DRAFT_3250 0.76 -0.4 544,451 + EX28DRAFT_3250 0.76 -0.6 544,451 + EX28DRAFT_3250 0.76 +0.2 544,452 - EX28DRAFT_3250 0.76 +2.2 544,452 - EX28DRAFT_3250 0.76 +0.2 544,455 + EX28DRAFT_3250 0.77 -1.2 544,455 + EX28DRAFT_3250 0.77 +1.0 544,544 + EX28DRAFT_3250 0.86 -0.5 544,544 + EX28DRAFT_3250 0.86 +0.1 544,545 - EX28DRAFT_3250 0.86 +0.4 544,633 - +0.7 544,637 + +1.2 544,696 + +2.7 544,696 + +0.2 544,696 + -3.9 544,696 + +0.9 544,696 + +0.6 544,697 - +0.2 544,697 - -0.6 544,708 - +1.1 544,785 + -0.9 544,785 + +0.6 544,830 + EX28DRAFT_3251 0.13 -0.5 544,831 - EX28DRAFT_3251 0.14 -4.3 544,939 - EX28DRAFT_3251 0.25 -0.6 545,320 + EX28DRAFT_3251 0.63 +0.5 545,323 + EX28DRAFT_3251 0.63 +1.5 545,323 + EX28DRAFT_3251 0.63 +0.6 545,410 + EX28DRAFT_3251 0.72 +0.3 545,493 + EX28DRAFT_3251 0.81 +0.7 545,493 + EX28DRAFT_3251 0.81 +0.2 545,493 + EX28DRAFT_3251 0.81 +0.8 545,493 + EX28DRAFT_3251 0.81 +0.7 545,493 + EX28DRAFT_3251 0.81 -0.8 545,493 + EX28DRAFT_3251 0.81 +0.6 545,493 + EX28DRAFT_3251 0.81 +0.5 545,493 + EX28DRAFT_3251 0.81 +1.2 545,602 + +0.6 545,602 + -0.3 545,646 + +0.1 545,646 + +0.0 545,650 + +0.3 545,650 + +0.2 545,650 + +0.9 545,650 + -0.2 545,650 + -3.3 545,650 + +0.6 545,650 + -1.1 545,650 + +0.3 545,650 + +0.3 545,650 + -3.7 545,650 + +0.7 545,650 + +0.3 545,650 + +0.1 545,676 + +0.8 545,681 + -0.4 545,681 + +0.6 545,824 + EX28DRAFT_3252 0.22 +0.5 545,937 + EX28DRAFT_3252 0.42 -0.6 545,937 + EX28DRAFT_3252 0.42 -3.4 546,061 + EX28DRAFT_3252 0.64 +0.6
Or see this region's nucleotide sequence