Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3249

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3247 and EX28DRAFT_3248 are separated by 4 nucleotidesEX28DRAFT_3248 and EX28DRAFT_3249 are separated by 7 nucleotidesEX28DRAFT_3249 and EX28DRAFT_3250 are separated by 227 nucleotides EX28DRAFT_3247: EX28DRAFT_3247 - mce related protein, at 541,323 to 541,871 _3247 EX28DRAFT_3248: EX28DRAFT_3248 - ABC transport permease subunit, at 541,876 to 542,658 _3248 EX28DRAFT_3249: EX28DRAFT_3249 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 542,666 to 543,478 _3249 EX28DRAFT_3250: EX28DRAFT_3250 - K+-dependent Na+/Ca+ exchanger related-protein, at 543,706 to 544,683 _3250 Position (kb) 542 543 544Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 541.668 kb on + strand, within EX28DRAFT_3247at 541.668 kb on + strand, within EX28DRAFT_3247at 541.744 kb on + strand, within EX28DRAFT_3247at 541.744 kb on + strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.745 kb on - strand, within EX28DRAFT_3247at 541.837 kb on - strandat 541.837 kb on - strandat 541.939 kb on + strandat 541.940 kb on - strandat 541.940 kb on - strandat 541.947 kb on + strandat 541.948 kb on - strandat 541.948 kb on - strandat 541.948 kb on - strandat 542.417 kb on + strand, within EX28DRAFT_3248at 542.417 kb on + strand, within EX28DRAFT_3248at 542.417 kb on + strand, within EX28DRAFT_3248at 542.418 kb on - strand, within EX28DRAFT_3248at 542.418 kb on - strand, within EX28DRAFT_3248at 542.436 kb on - strand, within EX28DRAFT_3248at 542.458 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.512 kb on - strand, within EX28DRAFT_3248at 542.513 kb on + strand, within EX28DRAFT_3248at 542.513 kb on + strand, within EX28DRAFT_3248at 542.514 kb on - strand, within EX28DRAFT_3248at 542.650 kb on + strandat 542.650 kb on + strandat 542.667 kb on + strandat 542.675 kb on + strandat 542.697 kb on + strandat 542.830 kb on + strand, within EX28DRAFT_3249at 542.832 kb on + strand, within EX28DRAFT_3249at 542.855 kb on + strand, within EX28DRAFT_3249at 542.864 kb on + strand, within EX28DRAFT_3249at 542.996 kb on + strand, within EX28DRAFT_3249at 542.997 kb on - strand, within EX28DRAFT_3249at 543.235 kb on + strand, within EX28DRAFT_3249at 543.235 kb on + strand, within EX28DRAFT_3249at 543.235 kb on + strand, within EX28DRAFT_3249at 543.237 kb on + strand, within EX28DRAFT_3249at 543.238 kb on - strand, within EX28DRAFT_3249at 543.238 kb on - strand, within EX28DRAFT_3249at 543.238 kb on - strand, within EX28DRAFT_3249at 543.480 kb on + strandat 543.481 kb on - strandat 543.492 kb on - strandat 543.494 kb on + strandat 543.556 kb on - strandat 543.558 kb on + strandat 543.608 kb on + strandat 543.645 kb on + strandat 543.645 kb on + strandat 543.646 kb on - strandat 543.683 kb on + strandat 543.684 kb on - strandat 543.686 kb on - strandat 543.686 kb on - strandat 543.714 kb on - strandat 543.714 kb on - strandat 543.714 kb on - strandat 543.732 kb on - strandat 543.754 kb on + strandat 543.755 kb on - strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.786 kb on + strandat 543.787 kb on - strandat 543.787 kb on - strandat 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.914 kb on + strand, within EX28DRAFT_3250at 543.945 kb on + strand, within EX28DRAFT_3250at 543.945 kb on + strand, within EX28DRAFT_3250at 543.946 kb on - strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 543.947 kb on + strand, within EX28DRAFT_3250at 544.038 kb on - strand, within EX28DRAFT_3250at 544.058 kb on + strand, within EX28DRAFT_3250at 544.063 kb on + strand, within EX28DRAFT_3250at 544.081 kb on + strand, within EX28DRAFT_3250at 544.082 kb on - strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.129 kb on + strand, within EX28DRAFT_3250at 544.130 kb on - strand, within EX28DRAFT_3250at 544.130 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.132 kb on - strand, within EX28DRAFT_3250at 544.137 kb on + strand, within EX28DRAFT_3250at 544.313 kb on - strand, within EX28DRAFT_3250at 544.431 kb on + strand, within EX28DRAFT_3250at 544.432 kb on - strand, within EX28DRAFT_3250at 544.434 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.451 kb on + strand, within EX28DRAFT_3250at 544.452 kb on - strand, within EX28DRAFT_3250at 544.452 kb on - strand, within EX28DRAFT_3250at 544.455 kb on + strand, within EX28DRAFT_3250at 544.455 kb on + strand, within EX28DRAFT_3250

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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541,668 + EX28DRAFT_3247 0.63 -0.6
541,668 + EX28DRAFT_3247 0.63 +1.1
541,744 + EX28DRAFT_3247 0.77 -0.3
541,744 + EX28DRAFT_3247 0.77 +1.2
541,745 - EX28DRAFT_3247 0.77 +1.5
541,745 - EX28DRAFT_3247 0.77 +0.7
541,745 - EX28DRAFT_3247 0.77 +1.9
541,837 - +0.8
541,837 - -4.8
541,939 + -0.5
541,940 - +0.3
541,940 - +0.0
541,947 + +0.0
541,948 - -2.0
541,948 - -2.2
541,948 - +0.5
542,417 + EX28DRAFT_3248 0.69 +0.3
542,417 + EX28DRAFT_3248 0.69 -0.5
542,417 + EX28DRAFT_3248 0.69 +1.9
542,418 - EX28DRAFT_3248 0.69 +0.4
542,418 - EX28DRAFT_3248 0.69 +0.9
542,436 - EX28DRAFT_3248 0.72 +0.1
542,458 - EX28DRAFT_3248 0.74 -1.5
542,512 - EX28DRAFT_3248 0.81 +1.7
542,512 - EX28DRAFT_3248 0.81 +0.2
542,512 - EX28DRAFT_3248 0.81 -1.6
542,513 + EX28DRAFT_3248 0.81 +0.6
542,513 + EX28DRAFT_3248 0.81 -1.5
542,514 - EX28DRAFT_3248 0.81 -2.3
542,650 + +1.0
542,650 + -0.6
542,667 + +0.2
542,675 + +0.1
542,697 + +0.0
542,830 + EX28DRAFT_3249 0.20 +0.4
542,832 + EX28DRAFT_3249 0.20 -4.0
542,855 + EX28DRAFT_3249 0.23 -1.3
542,864 + EX28DRAFT_3249 0.24 -0.9
542,996 + EX28DRAFT_3249 0.41 +2.5
542,997 - EX28DRAFT_3249 0.41 +0.6
543,235 + EX28DRAFT_3249 0.70 +0.7
543,235 + EX28DRAFT_3249 0.70 +0.1
543,235 + EX28DRAFT_3249 0.70 +0.4
543,237 + EX28DRAFT_3249 0.70 +0.9
543,238 - EX28DRAFT_3249 0.70 +0.1
543,238 - EX28DRAFT_3249 0.70 +0.7
543,238 - EX28DRAFT_3249 0.70 -0.1
543,480 + -0.6
543,481 - -0.5
543,492 - -1.1
543,494 + +1.3
543,556 - -1.9
543,558 + +0.2
543,608 + -3.2
543,645 + +0.7
543,645 + -0.9
543,646 - +0.5
543,683 + -2.0
543,684 - +0.1
543,686 - -0.4
543,686 - +0.8
543,714 - +0.4
543,714 - -4.2
543,714 - +0.7
543,732 - +0.7
543,754 + +0.7
543,755 - -1.1
543,786 + +0.2
543,786 + +0.2
543,786 + +0.8
543,786 + +0.8
543,787 - +0.3
543,787 - +0.7
543,914 + EX28DRAFT_3250 0.21 +0.7
543,914 + EX28DRAFT_3250 0.21 -0.7
543,914 + EX28DRAFT_3250 0.21 -0.1
543,914 + EX28DRAFT_3250 0.21 +0.8
543,945 + EX28DRAFT_3250 0.24 +0.0
543,945 + EX28DRAFT_3250 0.24 -1.7
543,946 - EX28DRAFT_3250 0.25 -1.6
543,947 + EX28DRAFT_3250 0.25 -3.8
543,947 + EX28DRAFT_3250 0.25 +0.3
543,947 + EX28DRAFT_3250 0.25 +1.0
544,038 - EX28DRAFT_3250 0.34 -0.5
544,058 + EX28DRAFT_3250 0.36 -0.5
544,063 + EX28DRAFT_3250 0.37 +0.2
544,081 + EX28DRAFT_3250 0.38 +0.0
544,082 - EX28DRAFT_3250 0.38 -4.2
544,129 + EX28DRAFT_3250 0.43 +0.7
544,129 + EX28DRAFT_3250 0.43 -3.3
544,129 + EX28DRAFT_3250 0.43 -2.6
544,130 - EX28DRAFT_3250 0.43 +0.0
544,130 - EX28DRAFT_3250 0.43 +1.4
544,132 - EX28DRAFT_3250 0.44 +0.5
544,132 - EX28DRAFT_3250 0.44 -1.7
544,132 - EX28DRAFT_3250 0.44 -0.1
544,137 + EX28DRAFT_3250 0.44 +0.9
544,313 - EX28DRAFT_3250 0.62 +0.2
544,431 + EX28DRAFT_3250 0.74 +1.3
544,432 - EX28DRAFT_3250 0.74 -0.5
544,434 + EX28DRAFT_3250 0.74 +1.0
544,451 + EX28DRAFT_3250 0.76 -0.1
544,451 + EX28DRAFT_3250 0.76 -0.4
544,451 + EX28DRAFT_3250 0.76 -0.6
544,451 + EX28DRAFT_3250 0.76 +0.2
544,452 - EX28DRAFT_3250 0.76 +2.2
544,452 - EX28DRAFT_3250 0.76 +0.2
544,455 + EX28DRAFT_3250 0.77 -1.2
544,455 + EX28DRAFT_3250 0.77 +1.0

Or see this region's nucleotide sequence