Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3196 and EX28DRAFT_3197 overlap by 43 nucleotides EX28DRAFT_3197 and EX28DRAFT_3198 are separated by 21 nucleotides EX28DRAFT_3198 and EX28DRAFT_3199 are separated by 9 nucleotides EX28DRAFT_3199 and EX28DRAFT_3200 are separated by 67 nucleotides
EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488
_3196
EX28DRAFT_3197: EX28DRAFT_3197 - TIGR00252 family protein, at 499,446 to 499,841
_3197
EX28DRAFT_3198: EX28DRAFT_3198 - Phosphoheptose isomerase, at 499,863 to 500,453
_3198
EX28DRAFT_3199: EX28DRAFT_3199 - Predicted periplasmic or secreted lipoprotein, at 500,463 to 501,038
_3199
EX28DRAFT_3200: EX28DRAFT_3200 - Predicted permeases, at 501,106 to 502,143
_3200
Position (kb) 499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 498.921 kb on - strand, within EX28DRAFT_3196 at 499.066 kb on + strand, within EX28DRAFT_3196 at 499.284 kb on - strand at 499.284 kb on - strand at 499.284 kb on - strand at 499.442 kb on + strand at 499.442 kb on + strand at 499.443 kb on - strand at 499.457 kb on - strand at 499.486 kb on + strand at 499.508 kb on + strand, within EX28DRAFT_3197 at 499.633 kb on + strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.704 kb on - strand, within EX28DRAFT_3197 at 499.742 kb on + strand, within EX28DRAFT_3197 at 499.757 kb on + strand, within EX28DRAFT_3197 at 499.815 kb on - strand at 499.839 kb on + strand at 499.840 kb on - strand at 499.840 kb on - strand at 499.850 kb on + strand at 499.851 kb on - strand at 499.878 kb on - strand at 500.099 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.387 kb on + strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.388 kb on - strand, within EX28DRAFT_3198 at 500.452 kb on - strand at 500.462 kb on + strand at 500.492 kb on + strand at 500.492 kb on + strand at 500.492 kb on + strand at 500.493 kb on - strand at 500.519 kb on + strand at 500.520 kb on - strand at 500.520 kb on - strand at 500.686 kb on - strand, within EX28DRAFT_3199 at 500.794 kb on + strand, within EX28DRAFT_3199 at 500.794 kb on + strand, within EX28DRAFT_3199 at 500.794 kb on + strand, within EX28DRAFT_3199 at 501.024 kb on - strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.027 kb on + strand at 501.028 kb on - strand at 501.028 kb on - strand at 501.117 kb on + strand at 501.117 kb on + strand at 501.118 kb on - strand at 501.121 kb on - strand at 501.121 kb on - strand at 501.193 kb on - strand at 501.193 kb on - strand at 501.193 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.235 kb on - strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 498,921 - EX28DRAFT_3196 0.74 +0.7 499,066 + EX28DRAFT_3196 0.80 +0.6 499,284 - -0.6 499,284 - +0.3 499,284 - +0.8 499,442 + -0.5 499,442 + -0.5 499,443 - +0.7 499,457 - -0.0 499,486 + +0.2 499,508 + EX28DRAFT_3197 0.16 -3.6 499,633 + EX28DRAFT_3197 0.47 -0.7 499,704 - EX28DRAFT_3197 0.65 +0.4 499,704 - EX28DRAFT_3197 0.65 -0.2 499,704 - EX28DRAFT_3197 0.65 +0.1 499,742 + EX28DRAFT_3197 0.75 -0.1 499,757 + EX28DRAFT_3197 0.79 -0.9 499,815 - +1.8 499,839 + +0.1 499,840 - -2.5 499,840 - +1.1 499,850 + +0.6 499,851 - +0.8 499,878 - +0.3 500,099 + EX28DRAFT_3198 0.40 -0.7 500,387 + EX28DRAFT_3198 0.89 +0.3 500,387 + EX28DRAFT_3198 0.89 +0.1 500,387 + EX28DRAFT_3198 0.89 +2.5 500,387 + EX28DRAFT_3198 0.89 +0.1 500,387 + EX28DRAFT_3198 0.89 +0.5 500,387 + EX28DRAFT_3198 0.89 +2.3 500,388 - EX28DRAFT_3198 0.89 +1.9 500,388 - EX28DRAFT_3198 0.89 -3.6 500,452 - -0.2 500,462 + +1.5 500,492 + +1.3 500,492 + -0.6 500,492 + -0.2 500,493 - +0.5 500,519 + +0.6 500,520 - +0.3 500,520 - +4.3 500,686 - EX28DRAFT_3199 0.39 +0.8 500,794 + EX28DRAFT_3199 0.57 -0.9 500,794 + EX28DRAFT_3199 0.57 -0.4 500,794 + EX28DRAFT_3199 0.57 -0.4 501,024 - -0.2 501,027 + +0.9 501,027 + -2.7 501,027 + +2.1 501,027 + -1.6 501,027 + +0.1 501,028 - -1.2 501,028 - +0.7 501,117 + +0.5 501,117 + -1.1 501,118 - +0.9 501,121 - +0.4 501,121 - -2.9 501,193 - +2.5 501,193 - -0.2 501,193 - +1.3 501,205 - +0.5 501,205 - +0.8 501,235 - EX28DRAFT_3200 0.12 +0.5 501,440 + EX28DRAFT_3200 0.32 -0.1 501,440 + EX28DRAFT_3200 0.32 -3.7 501,440 + EX28DRAFT_3200 0.32 -1.1 501,441 - EX28DRAFT_3200 0.32 +1.2 501,441 - EX28DRAFT_3200 0.32 +0.5 501,441 - EX28DRAFT_3200 0.32 -1.3 501,441 - EX28DRAFT_3200 0.32 +0.0
Or see this region's nucleotide sequence