Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2826 and EX28DRAFT_2827 are separated by 5 nucleotides EX28DRAFT_2827 and EX28DRAFT_2828 are separated by 175 nucleotides EX28DRAFT_2828 and EX28DRAFT_2829 are separated by 113 nucleotides EX28DRAFT_2829 and EX28DRAFT_2830 are separated by 139 nucleotides EX28DRAFT_2830 and EX28DRAFT_2831 are separated by 10 nucleotides
EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744
_2826
EX28DRAFT_2827: EX28DRAFT_2827 - Nitrous oxide-stimulated promoter, at 130,750 to 131,094
_2827
EX28DRAFT_2828: EX28DRAFT_2828 - Toxin SymE, type I toxin-antitoxin system, at 131,270 to 131,500
_2828
EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175
_2829
EX28DRAFT_2830: EX28DRAFT_2830 - hypothetical protein, at 134,315 to 134,536
_2830
EX28DRAFT_2831: EX28DRAFT_2831 - UbiD family decarboxylase, at 134,547 to 135,974
_2831
Position (kb) 131
132
133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 130.665 kb on - strand at 130.766 kb on + strand at 130.766 kb on + strand at 130.845 kb on + strand, within EX28DRAFT_2827 at 130.846 kb on - strand, within EX28DRAFT_2827 at 130.957 kb on - strand, within EX28DRAFT_2827 at 130.957 kb on - strand, within EX28DRAFT_2827 at 131.036 kb on + strand, within EX28DRAFT_2827 at 131.037 kb on - strand, within EX28DRAFT_2827 at 131.223 kb on + strand at 131.269 kb on + strand at 131.298 kb on - strand, within EX28DRAFT_2828 at 131.319 kb on - strand, within EX28DRAFT_2828 at 131.392 kb on - strand, within EX28DRAFT_2828 at 131.423 kb on - strand, within EX28DRAFT_2828 at 131.478 kb on + strand at 131.546 kb on - strand at 131.546 kb on - strand at 131.607 kb on + strand at 131.607 kb on + strand at 131.608 kb on - strand at 131.663 kb on - strand at 131.729 kb on + strand at 131.729 kb on + strand at 131.730 kb on - strand at 131.730 kb on - strand at 131.730 kb on - strand at 131.745 kb on + strand at 131.823 kb on + strand at 131.824 kb on - strand at 132.063 kb on + strand, within EX28DRAFT_2829 at 132.063 kb on + strand, within EX28DRAFT_2829 at 132.063 kb on + strand, within EX28DRAFT_2829 at 132.064 kb on - strand, within EX28DRAFT_2829 at 132.064 kb on - strand, within EX28DRAFT_2829 at 132.064 kb on - strand, within EX28DRAFT_2829 at 132.384 kb on + strand, within EX28DRAFT_2829 at 132.439 kb on - strand, within EX28DRAFT_2829 at 132.474 kb on - strand, within EX28DRAFT_2829 at 132.480 kb on + strand, within EX28DRAFT_2829 at 132.481 kb on - strand, within EX28DRAFT_2829 at 132.504 kb on + strand, within EX28DRAFT_2829 at 132.550 kb on - strand, within EX28DRAFT_2829 at 132.814 kb on - strand, within EX28DRAFT_2829 at 132.898 kb on + strand, within EX28DRAFT_2829 at 132.898 kb on + strand, within EX28DRAFT_2829 at 133.033 kb on + strand, within EX28DRAFT_2829 at 133.034 kb on - strand, within EX28DRAFT_2829 at 133.114 kb on + strand, within EX28DRAFT_2829 at 133.138 kb on + strand, within EX28DRAFT_2829 at 133.195 kb on + strand, within EX28DRAFT_2829 at 133.196 kb on - strand, within EX28DRAFT_2829 at 133.196 kb on - strand, within EX28DRAFT_2829 at 133.312 kb on + strand, within EX28DRAFT_2829 at 133.312 kb on + strand, within EX28DRAFT_2829 at 133.312 kb on + strand, within EX28DRAFT_2829 at 133.313 kb on - strand, within EX28DRAFT_2829 at 133.313 kb on - strand, within EX28DRAFT_2829 at 133.314 kb on + strand, within EX28DRAFT_2829 at 133.315 kb on - strand, within EX28DRAFT_2829 at 133.376 kb on + strand, within EX28DRAFT_2829 at 133.476 kb on + strand, within EX28DRAFT_2829 at 133.477 kb on - strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.480 kb on + strand, within EX28DRAFT_2829 at 133.481 kb on - strand, within EX28DRAFT_2829 at 133.481 kb on - strand, within EX28DRAFT_2829 at 133.482 kb on + strand, within EX28DRAFT_2829 at 133.483 kb on - strand, within EX28DRAFT_2829 at 133.483 kb on - strand, within EX28DRAFT_2829 at 133.517 kb on - strand, within EX28DRAFT_2829 at 133.517 kb on - strand, within EX28DRAFT_2829 at 133.517 kb on - strand, within EX28DRAFT_2829 at 133.528 kb on + strand, within EX28DRAFT_2829 at 133.717 kb on + strand, within EX28DRAFT_2829 at 133.717 kb on + strand, within EX28DRAFT_2829 at 133.718 kb on - strand, within EX28DRAFT_2829 at 133.718 kb on - strand, within EX28DRAFT_2829 at 133.893 kb on + strand, within EX28DRAFT_2829 at 133.893 kb on + strand, within EX28DRAFT_2829 at 133.893 kb on + strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.925 kb on - strand at 133.925 kb on - strand at 134.043 kb on + strand at 134.153 kb on - strand at 134.280 kb on + strand at 134.318 kb on + strand at 134.318 kb on + strand at 134.439 kb on + strand, within EX28DRAFT_2830 at 134.439 kb on + strand, within EX28DRAFT_2830 at 134.440 kb on - strand, within EX28DRAFT_2830 at 134.440 kb on - strand, within EX28DRAFT_2830 at 134.506 kb on + strand, within EX28DRAFT_2830 at 134.788 kb on - strand, within EX28DRAFT_2831 at 134.832 kb on + strand, within EX28DRAFT_2831 at 134.924 kb on + strand, within EX28DRAFT_2831 at 134.925 kb on - strand, within EX28DRAFT_2831 at 134.947 kb on + strand, within EX28DRAFT_2831 at 134.988 kb on - strand, within EX28DRAFT_2831 at 135.031 kb on + strand, within EX28DRAFT_2831 at 135.062 kb on - strand, within EX28DRAFT_2831 at 135.139 kb on + strand, within EX28DRAFT_2831 at 135.139 kb on + strand, within EX28DRAFT_2831
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 130,665 - -0.6 130,766 + +0.4 130,766 + -0.0 130,845 + EX28DRAFT_2827 0.28 -3.9 130,846 - EX28DRAFT_2827 0.28 +0.0 130,957 - EX28DRAFT_2827 0.60 -2.8 130,957 - EX28DRAFT_2827 0.60 +0.1 131,036 + EX28DRAFT_2827 0.83 +0.6 131,037 - EX28DRAFT_2827 0.83 +0.1 131,223 + -0.2 131,269 + -0.8 131,298 - EX28DRAFT_2828 0.12 +0.3 131,319 - EX28DRAFT_2828 0.21 +1.0 131,392 - EX28DRAFT_2828 0.53 +0.6 131,423 - EX28DRAFT_2828 0.66 -0.1 131,478 + -0.3 131,546 - -0.8 131,546 - +1.8 131,607 + -1.2 131,607 + -0.6 131,608 - +0.3 131,663 - -1.2 131,729 + +0.7 131,729 + -1.0 131,730 - +0.5 131,730 - -1.4 131,730 - -1.1 131,745 + +1.2 131,823 + +1.2 131,824 - +0.8 132,063 + EX28DRAFT_2829 0.18 -0.8 132,063 + EX28DRAFT_2829 0.18 -1.5 132,063 + EX28DRAFT_2829 0.18 +0.2 132,064 - EX28DRAFT_2829 0.18 -1.3 132,064 - EX28DRAFT_2829 0.18 -4.0 132,064 - EX28DRAFT_2829 0.18 -0.1 132,384 + EX28DRAFT_2829 0.30 +0.9 132,439 - EX28DRAFT_2829 0.32 +1.3 132,474 - EX28DRAFT_2829 0.34 +0.7 132,480 + EX28DRAFT_2829 0.34 -2.7 132,481 - EX28DRAFT_2829 0.34 +0.1 132,504 + EX28DRAFT_2829 0.35 +0.7 132,550 - EX28DRAFT_2829 0.37 -2.0 132,814 - EX28DRAFT_2829 0.47 +0.3 132,898 + EX28DRAFT_2829 0.50 -0.2 132,898 + EX28DRAFT_2829 0.50 +1.7 133,033 + EX28DRAFT_2829 0.55 +0.4 133,034 - EX28DRAFT_2829 0.55 +1.1 133,114 + EX28DRAFT_2829 0.59 -0.5 133,138 + EX28DRAFT_2829 0.59 -2.0 133,195 + EX28DRAFT_2829 0.62 +0.4 133,196 - EX28DRAFT_2829 0.62 +1.1 133,196 - EX28DRAFT_2829 0.62 -0.2 133,312 + EX28DRAFT_2829 0.66 +0.1 133,312 + EX28DRAFT_2829 0.66 +0.8 133,312 + EX28DRAFT_2829 0.66 -2.1 133,313 - EX28DRAFT_2829 0.66 -0.9 133,313 - EX28DRAFT_2829 0.66 +0.2 133,314 + EX28DRAFT_2829 0.66 -2.0 133,315 - EX28DRAFT_2829 0.66 +0.1 133,376 + EX28DRAFT_2829 0.69 +0.9 133,476 + EX28DRAFT_2829 0.73 +0.3 133,477 - EX28DRAFT_2829 0.73 -1.1 133,480 + EX28DRAFT_2829 0.73 +0.4 133,480 + EX28DRAFT_2829 0.73 -0.4 133,480 + EX28DRAFT_2829 0.73 +1.1 133,480 + EX28DRAFT_2829 0.73 -1.4 133,480 + EX28DRAFT_2829 0.73 -1.0 133,480 + EX28DRAFT_2829 0.73 -0.7 133,480 + EX28DRAFT_2829 0.73 +0.5 133,480 + EX28DRAFT_2829 0.73 +0.1 133,481 - EX28DRAFT_2829 0.73 -0.4 133,481 - EX28DRAFT_2829 0.73 -0.4 133,482 + EX28DRAFT_2829 0.73 -1.0 133,483 - EX28DRAFT_2829 0.73 +0.6 133,483 - EX28DRAFT_2829 0.73 -0.3 133,517 - EX28DRAFT_2829 0.74 +2.7 133,517 - EX28DRAFT_2829 0.74 +0.6 133,517 - EX28DRAFT_2829 0.74 -1.2 133,528 + EX28DRAFT_2829 0.75 -0.3 133,717 + EX28DRAFT_2829 0.82 +0.6 133,717 + EX28DRAFT_2829 0.82 -1.0 133,718 - EX28DRAFT_2829 0.82 -1.6 133,718 - EX28DRAFT_2829 0.82 -1.6 133,893 + EX28DRAFT_2829 0.89 -0.8 133,893 + EX28DRAFT_2829 0.89 -0.6 133,893 + EX28DRAFT_2829 0.89 -2.8 133,894 - EX28DRAFT_2829 0.89 -0.5 133,894 - EX28DRAFT_2829 0.89 -0.6 133,894 - EX28DRAFT_2829 0.89 -0.4 133,894 - EX28DRAFT_2829 0.89 +0.6 133,894 - EX28DRAFT_2829 0.89 +0.3 133,925 - -3.5 133,925 - -1.0 134,043 + +0.5 134,153 - -0.5 134,280 + -0.1 134,318 + -0.8 134,318 + +0.2 134,439 + EX28DRAFT_2830 0.56 +1.5 134,439 + EX28DRAFT_2830 0.56 +0.5 134,440 - EX28DRAFT_2830 0.56 +0.1 134,440 - EX28DRAFT_2830 0.56 -1.0 134,506 + EX28DRAFT_2830 0.86 +0.6 134,788 - EX28DRAFT_2831 0.17 +1.0 134,832 + EX28DRAFT_2831 0.20 -0.6 134,924 + EX28DRAFT_2831 0.26 +0.5 134,925 - EX28DRAFT_2831 0.26 +0.0 134,947 + EX28DRAFT_2831 0.28 +1.2 134,988 - EX28DRAFT_2831 0.31 -0.6 135,031 + EX28DRAFT_2831 0.34 -1.0 135,062 - EX28DRAFT_2831 0.36 +1.3 135,139 + EX28DRAFT_2831 0.41 +0.2 135,139 + EX28DRAFT_2831 0.41 +0.4
Or see this region's nucleotide sequence