Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1927 and EX28DRAFT_1928 are separated by 1 nucleotides EX28DRAFT_1928 and EX28DRAFT_1929 are separated by 100 nucleotides EX28DRAFT_1929 and EX28DRAFT_1930 are separated by 1 nucleotides EX28DRAFT_1930 and EX28DRAFT_1931 are separated by 159 nucleotides EX28DRAFT_1931 and EX28DRAFT_1932 are separated by 60 nucleotides
EX28DRAFT_1927: EX28DRAFT_1927 - Short-chain dehydrogenases of various substrate specificities, at 1,935,330 to 1,936,124
_1927
EX28DRAFT_1928: EX28DRAFT_1928 - transcriptional regulator, HxlR family, at 1,936,126 to 1,936,485
_1928
EX28DRAFT_1929: EX28DRAFT_1929 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,936,586 to 1,937,335
_1929
EX28DRAFT_1930: EX28DRAFT_1930 - Uncharacterized membrane-associated protein, at 1,937,337 to 1,937,840
_1930
EX28DRAFT_1931: EX28DRAFT_1931 - RNA, at 1,938,000 to 1,938,169
_1931
EX28DRAFT_1932: EX28DRAFT_1932 - Mg/Co/Ni transporter MgtE (contains CBS domain), at 1,938,230 to 1,939,231
_1932
Position (kb) 1936
1937
1938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1935.654 kb on - strand, within EX28DRAFT_1927 at 1935.654 kb on - strand, within EX28DRAFT_1927 at 1935.657 kb on - strand, within EX28DRAFT_1927 at 1935.694 kb on - strand, within EX28DRAFT_1927 at 1935.789 kb on + strand, within EX28DRAFT_1927 at 1935.801 kb on - strand, within EX28DRAFT_1927 at 1935.965 kb on + strand, within EX28DRAFT_1927 at 1936.122 kb on + strand at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.438 kb on - strand, within EX28DRAFT_1928 at 1936.439 kb on + strand, within EX28DRAFT_1928 at 1936.440 kb on - strand, within EX28DRAFT_1928 at 1936.549 kb on + strand at 1936.549 kb on + strand at 1936.549 kb on + strand at 1936.550 kb on - strand at 1936.550 kb on - strand at 1936.550 kb on - strand at 1936.551 kb on + strand at 1936.552 kb on - strand at 1936.603 kb on + strand at 1936.603 kb on + strand at 1936.603 kb on + strand at 1936.604 kb on - strand at 1936.607 kb on + strand at 1936.609 kb on + strand at 1936.609 kb on + strand at 1936.609 kb on + strand at 1936.610 kb on - strand at 1936.729 kb on + strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.938 kb on + strand, within EX28DRAFT_1929 at 1937.034 kb on - strand, within EX28DRAFT_1929 at 1937.034 kb on - strand, within EX28DRAFT_1929 at 1937.285 kb on + strand at 1937.286 kb on - strand at 1937.371 kb on + strand at 1937.371 kb on + strand at 1937.372 kb on - strand at 1937.414 kb on - strand, within EX28DRAFT_1930 at 1937.465 kb on - strand, within EX28DRAFT_1930 at 1937.493 kb on - strand, within EX28DRAFT_1930 at 1937.611 kb on + strand, within EX28DRAFT_1930 at 1937.611 kb on + strand, within EX28DRAFT_1930 at 1937.643 kb on + strand, within EX28DRAFT_1930 at 1937.743 kb on - strand, within EX28DRAFT_1930 at 1937.860 kb on + strand at 1937.940 kb on - strand at 1937.976 kb on - strand at 1937.981 kb on + strand at 1937.982 kb on - strand at 1938.052 kb on + strand, within EX28DRAFT_1931 at 1938.111 kb on + strand, within EX28DRAFT_1931 at 1938.112 kb on - strand, within EX28DRAFT_1931 at 1938.113 kb on + strand, within EX28DRAFT_1931 at 1938.137 kb on + strand, within EX28DRAFT_1931 at 1938.230 kb on - strand at 1938.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 1,935,654 - EX28DRAFT_1927 0.41 +0.6 1,935,654 - EX28DRAFT_1927 0.41 +0.3 1,935,657 - EX28DRAFT_1927 0.41 +0.7 1,935,694 - EX28DRAFT_1927 0.46 +0.4 1,935,789 + EX28DRAFT_1927 0.58 -2.1 1,935,801 - EX28DRAFT_1927 0.59 -0.2 1,935,965 + EX28DRAFT_1927 0.80 -0.6 1,936,122 + +0.7 1,936,437 + EX28DRAFT_1928 0.86 +0.7 1,936,437 + EX28DRAFT_1928 0.86 -1.0 1,936,437 + EX28DRAFT_1928 0.86 -1.4 1,936,438 - EX28DRAFT_1928 0.87 -1.6 1,936,439 + EX28DRAFT_1928 0.87 -1.4 1,936,440 - EX28DRAFT_1928 0.87 +0.7 1,936,549 + -0.7 1,936,549 + -0.0 1,936,549 + -0.2 1,936,550 - -1.0 1,936,550 - +1.8 1,936,550 - +0.4 1,936,551 + -1.9 1,936,552 - +0.9 1,936,603 + +0.6 1,936,603 + +0.1 1,936,603 + +2.9 1,936,604 - -0.9 1,936,607 + -0.2 1,936,609 + +0.4 1,936,609 + +1.3 1,936,609 + -0.3 1,936,610 - -0.4 1,936,729 + EX28DRAFT_1929 0.19 +0.6 1,936,730 - EX28DRAFT_1929 0.19 -2.7 1,936,730 - EX28DRAFT_1929 0.19 +0.1 1,936,730 - EX28DRAFT_1929 0.19 -0.7 1,936,938 + EX28DRAFT_1929 0.47 -1.5 1,937,034 - EX28DRAFT_1929 0.60 +1.3 1,937,034 - EX28DRAFT_1929 0.60 +0.7 1,937,285 + -2.6 1,937,286 - +0.4 1,937,371 + +0.5 1,937,371 + +0.7 1,937,372 - +0.1 1,937,414 - EX28DRAFT_1930 0.15 +0.8 1,937,465 - EX28DRAFT_1930 0.25 -0.8 1,937,493 - EX28DRAFT_1930 0.31 -0.4 1,937,611 + EX28DRAFT_1930 0.54 +1.6 1,937,611 + EX28DRAFT_1930 0.54 -1.3 1,937,643 + EX28DRAFT_1930 0.61 -1.0 1,937,743 - EX28DRAFT_1930 0.81 -0.3 1,937,860 + -1.7 1,937,940 - -2.2 1,937,976 - +0.7 1,937,981 + +0.7 1,937,982 - -3.1 1,938,052 + EX28DRAFT_1931 0.31 -2.2 1,938,111 + EX28DRAFT_1931 0.65 +0.6 1,938,112 - EX28DRAFT_1931 0.66 -1.0 1,938,113 + EX28DRAFT_1931 0.66 +0.3 1,938,137 + EX28DRAFT_1931 0.81 +1.6 1,938,230 - -1.3 1,938,288 - +1.7
Or see this region's nucleotide sequence