Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1496

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1495 and EX28DRAFT_1496 are separated by 63 nucleotidesEX28DRAFT_1496 and EX28DRAFT_1497 overlap by 11 nucleotidesEX28DRAFT_1497 and EX28DRAFT_1498 are separated by 172 nucleotides EX28DRAFT_1495: EX28DRAFT_1495 - Arabinose efflux permease, at 1,509,494 to 1,510,747 _1495 EX28DRAFT_1496: EX28DRAFT_1496 - Amino acid transporters, at 1,510,811 to 1,512,202 _1496 EX28DRAFT_1497: EX28DRAFT_1497 - hypothetical protein, at 1,512,192 to 1,512,386 _1497 EX28DRAFT_1498: EX28DRAFT_1498 - Glutamine synthetase, at 1,512,559 to 1,513,977 _1498 Position (kb) 1510 1511 1512 1513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1509.838 kb on + strand, within EX28DRAFT_1495at 1509.839 kb on - strand, within EX28DRAFT_1495at 1509.839 kb on - strand, within EX28DRAFT_1495at 1509.874 kb on + strand, within EX28DRAFT_1495at 1509.874 kb on + strand, within EX28DRAFT_1495at 1509.938 kb on + strand, within EX28DRAFT_1495at 1509.938 kb on + strand, within EX28DRAFT_1495at 1509.989 kb on + strand, within EX28DRAFT_1495at 1510.057 kb on + strand, within EX28DRAFT_1495at 1510.125 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.270 kb on + strand, within EX28DRAFT_1495at 1510.271 kb on - strand, within EX28DRAFT_1495at 1510.271 kb on - strand, within EX28DRAFT_1495at 1510.274 kb on + strand, within EX28DRAFT_1495at 1510.275 kb on - strand, within EX28DRAFT_1495at 1510.275 kb on - strand, within EX28DRAFT_1495at 1510.275 kb on - strand, within EX28DRAFT_1495at 1510.278 kb on + strand, within EX28DRAFT_1495at 1510.278 kb on + strand, within EX28DRAFT_1495at 1510.278 kb on + strand, within EX28DRAFT_1495at 1510.279 kb on - strand, within EX28DRAFT_1495at 1510.279 kb on - strand, within EX28DRAFT_1495at 1510.279 kb on - strand, within EX28DRAFT_1495at 1510.346 kb on + strand, within EX28DRAFT_1495at 1510.346 kb on + strand, within EX28DRAFT_1495at 1510.440 kb on + strand, within EX28DRAFT_1495at 1510.441 kb on - strand, within EX28DRAFT_1495at 1510.441 kb on - strand, within EX28DRAFT_1495at 1510.600 kb on + strand, within EX28DRAFT_1495at 1510.601 kb on - strand, within EX28DRAFT_1495at 1510.601 kb on - strand, within EX28DRAFT_1495at 1510.604 kb on + strand, within EX28DRAFT_1495at 1510.604 kb on + strand, within EX28DRAFT_1495at 1510.607 kb on + strand, within EX28DRAFT_1495at 1510.655 kb on - strandat 1510.658 kb on + strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.659 kb on - strandat 1510.749 kb on - strandat 1511.058 kb on + strand, within EX28DRAFT_1496at 1511.059 kb on - strand, within EX28DRAFT_1496at 1511.059 kb on - strand, within EX28DRAFT_1496at 1511.072 kb on - strand, within EX28DRAFT_1496at 1511.081 kb on - strand, within EX28DRAFT_1496at 1511.157 kb on - strand, within EX28DRAFT_1496at 1511.168 kb on - strand, within EX28DRAFT_1496at 1511.253 kb on + strand, within EX28DRAFT_1496at 1511.253 kb on + strand, within EX28DRAFT_1496at 1511.303 kb on - strand, within EX28DRAFT_1496at 1511.303 kb on - strand, within EX28DRAFT_1496at 1511.306 kb on + strand, within EX28DRAFT_1496at 1511.355 kb on + strand, within EX28DRAFT_1496at 1511.581 kb on + strand, within EX28DRAFT_1496at 1511.582 kb on - strand, within EX28DRAFT_1496at 1511.582 kb on - strand, within EX28DRAFT_1496at 1511.696 kb on - strand, within EX28DRAFT_1496at 1511.744 kb on - strand, within EX28DRAFT_1496at 1511.832 kb on + strand, within EX28DRAFT_1496at 1511.833 kb on - strand, within EX28DRAFT_1496at 1511.875 kb on - strand, within EX28DRAFT_1496at 1511.937 kb on + strand, within EX28DRAFT_1496at 1511.938 kb on - strand, within EX28DRAFT_1496at 1512.027 kb on + strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.028 kb on - strand, within EX28DRAFT_1496at 1512.077 kb on - strandat 1512.077 kb on - strandat 1512.102 kb on + strandat 1512.193 kb on + strandat 1512.302 kb on - strand, within EX28DRAFT_1497at 1512.368 kb on - strandat 1512.392 kb on - strandat 1512.485 kb on - strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.515 kb on + strandat 1512.516 kb on - strandat 1512.516 kb on - strandat 1512.519 kb on + strandat 1512.519 kb on + strandat 1512.959 kb on + strand, within EX28DRAFT_1498at 1512.959 kb on + strand, within EX28DRAFT_1498at 1513.191 kb on + strand, within EX28DRAFT_1498at 1513.191 kb on + strand, within EX28DRAFT_1498at 1513.192 kb on - strand, within EX28DRAFT_1498at 1513.192 kb on - strand, within EX28DRAFT_1498at 1513.192 kb on - strand, within EX28DRAFT_1498

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,509,838 + EX28DRAFT_1495 0.27 -1.0
1,509,839 - EX28DRAFT_1495 0.28 +1.2
1,509,839 - EX28DRAFT_1495 0.28 +1.0
1,509,874 + EX28DRAFT_1495 0.30 +0.1
1,509,874 + EX28DRAFT_1495 0.30 -0.8
1,509,938 + EX28DRAFT_1495 0.35 -0.3
1,509,938 + EX28DRAFT_1495 0.35 +1.5
1,509,989 + EX28DRAFT_1495 0.39 -1.9
1,510,057 + EX28DRAFT_1495 0.45 +0.1
1,510,125 + EX28DRAFT_1495 0.50 -1.1
1,510,270 + EX28DRAFT_1495 0.62 +1.1
1,510,270 + EX28DRAFT_1495 0.62 +0.7
1,510,270 + EX28DRAFT_1495 0.62 -1.0
1,510,270 + EX28DRAFT_1495 0.62 -1.8
1,510,271 - EX28DRAFT_1495 0.62 +1.6
1,510,271 - EX28DRAFT_1495 0.62 -1.0
1,510,274 + EX28DRAFT_1495 0.62 -1.3
1,510,275 - EX28DRAFT_1495 0.62 -1.6
1,510,275 - EX28DRAFT_1495 0.62 -0.5
1,510,275 - EX28DRAFT_1495 0.62 +0.6
1,510,278 + EX28DRAFT_1495 0.63 -0.7
1,510,278 + EX28DRAFT_1495 0.63 +1.7
1,510,278 + EX28DRAFT_1495 0.63 -0.4
1,510,279 - EX28DRAFT_1495 0.63 -3.6
1,510,279 - EX28DRAFT_1495 0.63 -1.3
1,510,279 - EX28DRAFT_1495 0.63 -3.6
1,510,346 + EX28DRAFT_1495 0.68 +0.4
1,510,346 + EX28DRAFT_1495 0.68 +1.1
1,510,440 + EX28DRAFT_1495 0.75 -0.3
1,510,441 - EX28DRAFT_1495 0.76 +0.8
1,510,441 - EX28DRAFT_1495 0.76 +1.2
1,510,600 + EX28DRAFT_1495 0.88 -0.2
1,510,601 - EX28DRAFT_1495 0.88 -0.0
1,510,601 - EX28DRAFT_1495 0.88 -1.5
1,510,604 + EX28DRAFT_1495 0.89 +0.3
1,510,604 + EX28DRAFT_1495 0.89 -1.3
1,510,607 + EX28DRAFT_1495 0.89 -0.9
1,510,655 - +1.6
1,510,658 + -3.6
1,510,659 - +0.9
1,510,659 - -0.3
1,510,659 - +1.5
1,510,659 - -3.0
1,510,659 - -2.3
1,510,749 - +0.9
1,511,058 + EX28DRAFT_1496 0.18 -1.5
1,511,059 - EX28DRAFT_1496 0.18 -0.8
1,511,059 - EX28DRAFT_1496 0.18 +0.6
1,511,072 - EX28DRAFT_1496 0.19 +0.6
1,511,081 - EX28DRAFT_1496 0.19 +1.2
1,511,157 - EX28DRAFT_1496 0.25 -2.9
1,511,168 - EX28DRAFT_1496 0.26 -0.7
1,511,253 + EX28DRAFT_1496 0.32 +0.0
1,511,253 + EX28DRAFT_1496 0.32 -0.0
1,511,303 - EX28DRAFT_1496 0.35 -1.2
1,511,303 - EX28DRAFT_1496 0.35 -1.0
1,511,306 + EX28DRAFT_1496 0.36 -0.5
1,511,355 + EX28DRAFT_1496 0.39 -0.9
1,511,581 + EX28DRAFT_1496 0.55 +1.1
1,511,582 - EX28DRAFT_1496 0.55 -0.1
1,511,582 - EX28DRAFT_1496 0.55 +0.1
1,511,696 - EX28DRAFT_1496 0.64 +0.0
1,511,744 - EX28DRAFT_1496 0.67 +0.7
1,511,832 + EX28DRAFT_1496 0.73 -0.6
1,511,833 - EX28DRAFT_1496 0.73 -0.1
1,511,875 - EX28DRAFT_1496 0.76 +0.6
1,511,937 + EX28DRAFT_1496 0.81 +2.2
1,511,938 - EX28DRAFT_1496 0.81 +0.8
1,512,027 + EX28DRAFT_1496 0.87 -0.2
1,512,028 - EX28DRAFT_1496 0.87 +0.9
1,512,028 - EX28DRAFT_1496 0.87 -0.2
1,512,028 - EX28DRAFT_1496 0.87 -0.8
1,512,028 - EX28DRAFT_1496 0.87 -0.3
1,512,077 - +0.6
1,512,077 - +0.1
1,512,102 + -1.5
1,512,193 + -0.3
1,512,302 - EX28DRAFT_1497 0.56 +0.6
1,512,368 - -0.5
1,512,392 - +0.9
1,512,485 - -3.2
1,512,515 + +0.2
1,512,515 + -3.7
1,512,515 + +0.1
1,512,515 + +0.8
1,512,515 + +0.8
1,512,515 + +0.8
1,512,516 - +0.3
1,512,516 - +0.0
1,512,519 + -0.4
1,512,519 + -1.2
1,512,959 + EX28DRAFT_1498 0.28 +0.5
1,512,959 + EX28DRAFT_1498 0.28 +0.2
1,513,191 + EX28DRAFT_1498 0.45 +0.4
1,513,191 + EX28DRAFT_1498 0.45 -0.9
1,513,192 - EX28DRAFT_1498 0.45 -0.9
1,513,192 - EX28DRAFT_1498 0.45 -1.3
1,513,192 - EX28DRAFT_1498 0.45 +0.1

Or see this region's nucleotide sequence