Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1345

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
1,340,452	+		EX28DRAFT_1344	0.67	+0.6
1,340,525	-		EX28DRAFT_1344	0.70	-1.7
1,340,525	-		EX28DRAFT_1344	0.70	+0.8
1,340,525	-		EX28DRAFT_1344	0.70	+0.9
1,340,632	-		EX28DRAFT_1344	0.75	+1.2
1,340,695	+		EX28DRAFT_1344	0.78	-1.3
1,340,695	+		EX28DRAFT_1344	0.78	-2.3
1,340,696	-		EX28DRAFT_1344	0.78	+0.6
1,340,754	+		EX28DRAFT_1344	0.81	-1.1
1,340,755	-		EX28DRAFT_1344	0.81	-0.3
1,340,755	-		EX28DRAFT_1344	0.81	-1.9
1,340,767	-		EX28DRAFT_1344	0.81	+0.7
1,340,767	-		EX28DRAFT_1344	0.81	+0.5
1,341,004	+				+1.6
1,341,134	-				-2.8
1,341,134	-				+1.1
1,341,159	+				+0.2
1,341,178	+				+0.7
1,341,179	-				-0.0
1,341,179	-				-3.5
1,341,184	+				-0.7
1,341,184	+				+0.9
1,341,185	-				-0.0
1,341,274	+				+0.9
1,341,288	-				+0.6
1,341,309	+				+0.3
1,341,364	+				-0.9
1,341,561	-				-1.3
1,341,719	+				-0.9
1,341,720	-				-0.2
1,341,720	-				+0.5
1,341,975	-				-0.4
1,342,010	+				-3.8
1,342,010	+				+1.2
1,342,011	-				-2.0
1,342,014	+				-3.6
1,342,014	+				-0.3
1,342,016	+				+1.8
1,342,016	+				-3.0
1,342,016	+				-0.1
1,342,016	+				+0.3
1,342,017	-				+0.9
1,342,017	-				+0.7
1,342,109	+				+0.6
1,342,179	+				+0.8
1,342,179	+				-0.7
1,342,220	+				+0.7
1,342,220	+				-0.3
1,342,335	-				+3.8
1,342,716	-				-3.7
1,342,716	-				+0.3
1,342,718	+				+0.0
1,342,718	+				+1.1
1,342,743	-				-0.3
1,342,769	+				-0.1
1,342,770	-				-2.8
1,342,770	-				+0.5
1,342,907	+				+0.7
1,342,908	-				-1.6
1,342,938	+				-0.3
1,342,939	-				-5.1
1,342,942	+				+1.8
1,342,942	+				-0.2
1,342,943	-				-3.5
1,343,003	+				+0.7
1,343,109	-				+1.0
1,343,125	-				+0.7
1,343,186	+		EX28DRAFT_1345	0.10	-0.6
1,343,186	+		EX28DRAFT_1345	0.10	+1.3
1,343,186	+		EX28DRAFT_1345	0.10	+0.8
1,343,187	-		EX28DRAFT_1345	0.10	+2.2
1,343,201	+		EX28DRAFT_1345	0.10	+1.1
1,343,201	+		EX28DRAFT_1345	0.10	+0.9
1,343,202	-		EX28DRAFT_1345	0.10	+2.2
1,343,202	-		EX28DRAFT_1345	0.10	+2.1
1,343,231	+		EX28DRAFT_1345	0.10	+1.0
1,343,232	-		EX28DRAFT_1345	0.10	-1.4
1,343,303	+		EX28DRAFT_1345	0.11	+0.1
1,343,303	+		EX28DRAFT_1345	0.11	-2.1
1,343,303	+		EX28DRAFT_1345	0.11	-4.2
1,343,306	+		EX28DRAFT_1345	0.11	+0.9
1,343,328	+		EX28DRAFT_1345	0.11	+3.3
1,343,339	+		EX28DRAFT_1345	0.11	-1.1
1,343,339	+		EX28DRAFT_1345	0.11	-4.6
1,343,478	+		EX28DRAFT_1345	0.12	-3.3
1,343,479	-		EX28DRAFT_1345	0.12	+1.1
1,343,559	-		EX28DRAFT_1345	0.12	+1.1
1,343,685	-		EX28DRAFT_1345	0.13	-0.2
1,343,745	+		EX28DRAFT_1345	0.13	-0.1
1,343,745	+		EX28DRAFT_1345	0.13	+1.4
1,343,746	-		EX28DRAFT_1345	0.13	+1.1
1,343,823	-		EX28DRAFT_1345	0.14	-0.7
1,343,823	-		EX28DRAFT_1345	0.14	+2.5
1,343,823	-		EX28DRAFT_1345	0.14	-4.5
1,343,855	+		EX28DRAFT_1345	0.14	-1.5
1,343,856	-		EX28DRAFT_1345	0.14	+0.2
1,343,856	-		EX28DRAFT_1345	0.14	+0.2
1,343,856	-		EX28DRAFT_1345	0.14	+0.3
1,343,949	-		EX28DRAFT_1345	0.14	+2.3
1,343,992	-		EX28DRAFT_1345	0.15	+0.2
1,344,071	+		EX28DRAFT_1345	0.15	-2.1
1,344,072	-		EX28DRAFT_1345	0.15	-0.1
1,344,072	-		EX28DRAFT_1345	0.15	+0.4
1,344,176	+		EX28DRAFT_1345	0.16	-0.4
1,344,176	+		EX28DRAFT_1345	0.16	+0.4
1,344,183	-		EX28DRAFT_1345	0.16	-0.8
1,344,183	-		EX28DRAFT_1345	0.16	-2.6
1,344,183	-		EX28DRAFT_1345	0.16	-0.1
1,344,256	-		EX28DRAFT_1345	0.16	-2.9
1,344,274	+		EX28DRAFT_1345	0.16	+0.6
1,344,275	-		EX28DRAFT_1345	0.16	-0.6
1,344,275	-		EX28DRAFT_1345	0.16	-0.2
1,344,488	+		EX28DRAFT_1345	0.17	-0.0
1,344,489	-		EX28DRAFT_1345	0.17	-0.0
1,344,492	+		EX28DRAFT_1345	0.17	-1.4
1,344,492	+		EX28DRAFT_1345	0.17	+1.8
1,344,493	-		EX28DRAFT_1345	0.17	+1.5
1,344,493	-		EX28DRAFT_1345	0.17	-0.9
1,344,493	-		EX28DRAFT_1345	0.17	+0.7
1,344,493	-		EX28DRAFT_1345	0.17	-0.4
1,344,495	-		EX28DRAFT_1345	0.17	-0.4
1,344,528	-		EX28DRAFT_1345	0.18	+0.4
1,344,557	+		EX28DRAFT_1345	0.18	+0.3
1,344,641	+		EX28DRAFT_1345	0.18	-0.6
1,344,641	+		EX28DRAFT_1345	0.18	+0.3
1,344,803	+		EX28DRAFT_1345	0.19	+0.2
1,344,804	-		EX28DRAFT_1345	0.19	+0.5
1,344,804	-		EX28DRAFT_1345	0.19	+0.1
1,344,804	-		EX28DRAFT_1345	0.19	+1.0
1,344,807	-		EX28DRAFT_1345	0.19	+1.1
1,344,812	+		EX28DRAFT_1345	0.19	+0.9
1,344,813	-		EX28DRAFT_1345	0.19	+1.7
1,344,823	-		EX28DRAFT_1345	0.19	+1.1
1,344,845	+		EX28DRAFT_1345	0.19	+1.6
1,344,871	+		EX28DRAFT_1345	0.20	-0.2
1,344,872	-		EX28DRAFT_1345	0.20	+1.9
1,344,914	+		EX28DRAFT_1345	0.20	-4.2
1,344,966	+		EX28DRAFT_1345	0.20	-0.9
1,344,967	-		EX28DRAFT_1345	0.20	+0.1
1,345,057	-		EX28DRAFT_1345	0.21	-1.5
1,345,092	+		EX28DRAFT_1345	0.21	+0.6
1,345,130	+		EX28DRAFT_1345	0.21	-0.9
1,345,163	+		EX28DRAFT_1345	0.21	-0.7
1,345,164	-		EX28DRAFT_1345	0.21	-1.9
1,345,344	+		EX28DRAFT_1345	0.22	-2.9
1,345,440	-		EX28DRAFT_1345	0.23	-2.1
1,345,445	+		EX28DRAFT_1345	0.23	-2.1
1,345,446	-		EX28DRAFT_1345	0.23	+0.8
1,345,449	+		EX28DRAFT_1345	0.23	+1.1
1,345,537	-		EX28DRAFT_1345	0.23	-3.3
1,345,660	-		EX28DRAFT_1345	0.24	+1.0
1,345,747	-		EX28DRAFT_1345	0.24	+1.4
1,345,750	+		EX28DRAFT_1345	0.24	+0.3
1,345,801	-		EX28DRAFT_1345	0.25	+0.8
1,345,802	+		EX28DRAFT_1345	0.25	-0.4
1,345,802	+		EX28DRAFT_1345	0.25	+0.9
1,345,846	-		EX28DRAFT_1345	0.25	+0.2
1,345,846	-		EX28DRAFT_1345	0.25	+0.5
1,346,135	+		EX28DRAFT_1345	0.27	+1.2
1,346,135	+		EX28DRAFT_1345	0.27	-0.5
1,346,235	+		EX28DRAFT_1345	0.27	-3.1
1,346,432	+		EX28DRAFT_1345	0.28	+1.0
1,346,433	-		EX28DRAFT_1345	0.28	-0.9
1,346,648	+		EX28DRAFT_1345	0.29	+0.2
1,346,732	+		EX28DRAFT_1345	0.30	+1.5
1,346,732	+		EX28DRAFT_1345	0.30	-3.9
1,346,732	+		EX28DRAFT_1345	0.30	-0.2
1,346,853	+		EX28DRAFT_1345	0.31	+0.6
1,347,033	-		EX28DRAFT_1345	0.32	-1.3
1,347,330	+		EX28DRAFT_1345	0.33	+1.5
1,347,332	+		EX28DRAFT_1345	0.33	+0.3
1,347,332	+		EX28DRAFT_1345	0.33	+1.1
1,347,332	+		EX28DRAFT_1345	0.33	+0.2
1,347,332	+		EX28DRAFT_1345	0.33	-0.1
1,347,333	-		EX28DRAFT_1345	0.33	+0.6
1,347,333	-		EX28DRAFT_1345	0.33	+0.0
1,347,333	-		EX28DRAFT_1345	0.33	+0.0
1,347,629	+		EX28DRAFT_1345	0.35	-0.7
1,347,727	-		EX28DRAFT_1345	0.35	-0.3
1,347,929	+		EX28DRAFT_1345	0.37	+1.1
1,348,083	+		EX28DRAFT_1345	0.37	-0.4
1,348,229	+		EX28DRAFT_1345	0.38	-0.9
1,348,229	+		EX28DRAFT_1345	0.38	-0.4
1,348,230	-		EX28DRAFT_1345	0.38	-0.2
1,348,398	+		EX28DRAFT_1345	0.39	+1.0
1,348,398	+		EX28DRAFT_1345	0.39	+1.3
1,348,402	-		EX28DRAFT_1345	0.39	-4.2
1,348,449	-		EX28DRAFT_1345	0.39	-0.9
1,348,449	-		EX28DRAFT_1345	0.39	+1.1
1,348,449	-		EX28DRAFT_1345	0.39	+0.5
1,348,530	-		EX28DRAFT_1345	0.40	+1.6
1,348,830	-		EX28DRAFT_1345	0.42	-2.4
1,348,926	+		EX28DRAFT_1345	0.42	+0.8
1,349,129	+		EX28DRAFT_1345	0.43	-2.1
1,349,130	-		EX28DRAFT_1345	0.43	-3.1
1,349,248	-		EX28DRAFT_1345	0.44	-2.8
1,349,359	-		EX28DRAFT_1345	0.44	-2.8
1,349,390	+		EX28DRAFT_1345	0.45	+0.4
1,349,878	+		EX28DRAFT_1345	0.47	+0.5
1,349,878	+		EX28DRAFT_1345	0.47	+4.9
1,349,879	-		EX28DRAFT_1345	0.47	+0.5
1,349,881	-		EX28DRAFT_1345	0.47	+0.7
1,350,027	-		EX28DRAFT_1345	0.48	+0.1
1,350,027	-		EX28DRAFT_1345	0.48	-0.6
1,350,027	-		EX28DRAFT_1345	0.48	+1.1
1,350,243	+		EX28DRAFT_1345	0.49	+0.1
1,350,246	-		EX28DRAFT_1345	0.49	-2.8
1,350,246	-		EX28DRAFT_1345	0.49	-1.5
1,350,246	-		EX28DRAFT_1345	0.49	+1.5
1,350,327	-		EX28DRAFT_1345	0.50	+0.3
1,350,327	-		EX28DRAFT_1345	0.50	-2.2
1,350,490	-		EX28DRAFT_1345	0.51	+1.3
1,350,775	-		EX28DRAFT_1345	0.52	+1.1
1,350,778	+		EX28DRAFT_1345	0.52	-1.3
1,350,779	-		EX28DRAFT_1345	0.52	-1.4
1,351,223	+		EX28DRAFT_1345	0.55	+1.8
1,351,523	+		EX28DRAFT_1345	0.56	+0.1
1,351,591	-		EX28DRAFT_1345	0.57	-0.7
1,351,604	-		EX28DRAFT_1345	0.57	-1.9
1,351,675	+		EX28DRAFT_1345	0.57	-1.0
1,352,002	-		EX28DRAFT_1345	0.59	+4.2
1,352,040	+		EX28DRAFT_1345	0.59	+2.0
1,352,041	-		EX28DRAFT_1345	0.59	+2.4
1,352,043	-		EX28DRAFT_1345	0.59	+2.2
1,352,043	-		EX28DRAFT_1345	0.59	+0.8
1,352,642	+		EX28DRAFT_1345	0.63	-2.2
1,352,643	-		EX28DRAFT_1345	0.63	+1.8
1,352,724	-		EX28DRAFT_1345	0.63	-0.4
1,352,847	+		EX28DRAFT_1345	0.64	-0.7
1,352,847	+		EX28DRAFT_1345	0.64	-1.5
1,352,848	-		EX28DRAFT_1345	0.64	-0.2
1,352,851	+		EX28DRAFT_1345	0.64	+1.5
1,352,851	+		EX28DRAFT_1345	0.64	+0.6
1,352,852	-		EX28DRAFT_1345	0.64	-2.1
1,353,020	+		EX28DRAFT_1345	0.65	-3.0
1,353,122	-		EX28DRAFT_1345	0.65	+0.5
1,353,122	-		EX28DRAFT_1345	0.65	+1.4
1,353,122	-		EX28DRAFT_1345	0.65	+0.3
1,353,227	-		EX28DRAFT_1345	0.66	+3.0
1,353,321	-		EX28DRAFT_1345	0.66	-0.1
1,353,388	-		EX28DRAFT_1345	0.67	-2.3
1,353,620	+		EX28DRAFT_1345	0.68	-0.9
1,353,620	+		EX28DRAFT_1345	0.68	+1.0
1,353,621	-		EX28DRAFT_1345	0.68	-0.4
1,353,621	-		EX28DRAFT_1345	0.68	-3.0
1,353,625	-		EX28DRAFT_1345	0.68	+0.5
1,353,839	+		EX28DRAFT_1345	0.69	+1.6
1,353,839	+		EX28DRAFT_1345	0.69	-3.5
1,353,840	-		EX28DRAFT_1345	0.69	-0.1
1,353,840	-		EX28DRAFT_1345	0.69	+0.1
1,353,840	-		EX28DRAFT_1345	0.69	-3.3
1,353,920	+		EX28DRAFT_1345	0.70	+1.1
1,353,920	+		EX28DRAFT_1345	0.70	+0.5
1,353,921	-		EX28DRAFT_1345	0.70	-3.7
1,353,921	-		EX28DRAFT_1345	0.70	+0.3
1,354,218	-		EX28DRAFT_1345	0.71	-0.6
1,354,218	-		EX28DRAFT_1345	0.71	-0.1
1,354,518	-		EX28DRAFT_1345	0.73	-4.9
1,354,618	-		EX28DRAFT_1345	0.74	+1.0
1,354,814	+		EX28DRAFT_1345	0.75	-0.2
1,354,815	-		EX28DRAFT_1345	0.75	-3.0
1,354,815	-		EX28DRAFT_1345	0.75	-0.1
1,355,204	-		EX28DRAFT_1345	0.77	+1.8
1,355,414	+		EX28DRAFT_1345	0.78	-1.3
1,355,414	+		EX28DRAFT_1345	0.78	+0.8
1,355,414	+		EX28DRAFT_1345	0.78	-0.5
1,355,415	-		EX28DRAFT_1345	0.78	-0.2
1,355,415	-		EX28DRAFT_1345	0.78	+1.1
1,355,517	+		EX28DRAFT_1345	0.79	-0.6
1,355,517	+		EX28DRAFT_1345	0.79	-0.1
1,355,633	+		EX28DRAFT_1345	0.79	-0.6
1,355,633	+		EX28DRAFT_1345	0.79	-4.2
1,355,739	+		EX28DRAFT_1345	0.80	+0.3
1,356,289	-		EX28DRAFT_1345	0.83	-1.1
1,356,289	-		EX28DRAFT_1345	0.83	-0.7
1,356,382	+		EX28DRAFT_1345	0.83	-0.1
1,356,912	-		EX28DRAFT_1345	0.86	-1.4
1,357,129	+		EX28DRAFT_1345	0.88	-1.2
1,357,212	-		EX28DRAFT_1345	0.88	-0.4
1,357,212	-		EX28DRAFT_1345	0.88	+0.6
1,357,333	-		EX28DRAFT_1345	0.89	+1.1
1,357,338	+		EX28DRAFT_1345	0.89	-3.1
1,357,430	+		EX28DRAFT_1345	0.89	+0.5
1,357,495	+		EX28DRAFT_1345	0.90	+0.1
1,357,509	-		EX28DRAFT_1345	0.90	-0.0
1,357,723	-				-0.4
1,357,926	+				+0.4
1,358,104	-				+0.2
1,358,472	+				-2.6
1,358,473	-				-3.1
1,358,569	-				+0.4
1,358,647	+				-0.0
1,358,647	+				-0.1
1,358,648	-				+0.1
1,359,009	+				+1.0
1,359,082	-				+0.4
1,359,082	-				-0.6
1,359,152	+				+0.3
1,359,187	-				-0.5
1,359,189	-				-0.8
1,359,415	+				-3.6
1,359,415	+				-3.0
1,359,416	-				-2.9
1,359,416	-				+0.8
1,359,416	-				+3.1
1,359,416	-				+0.6
1,359,566	-				+0.2
1,359,588	+				+0.3
1,359,600	-				-0.2
1,359,675	+		EX28DRAFT_1346	0.14	+0.1
1,359,685	+		EX28DRAFT_1346	0.15	+1.4
1,359,686	-		EX28DRAFT_1346	0.15	-1.2
1,359,908	+		EX28DRAFT_1346	0.32	-2.7
1,359,909	-		EX28DRAFT_1346	0.32	-1.2
1,360,011	+		EX28DRAFT_1346	0.40	-0.2
1,360,059	-		EX28DRAFT_1346	0.43	+1.3
1,360,065	+		EX28DRAFT_1346	0.44	+1.1
1,360,065	+		EX28DRAFT_1346	0.44	+0.9
1,360,066	-		EX28DRAFT_1346	0.44	-0.3
1,360,073	-		EX28DRAFT_1346	0.44	+0.5
1,360,073	-		EX28DRAFT_1346	0.44	-1.6
1,360,188	+		EX28DRAFT_1346	0.53	-0.5
1,360,311	-		EX28DRAFT_1346	0.62	-0.2