Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1311 and EX28DRAFT_1312 are separated by 185 nucleotides EX28DRAFT_1312 and EX28DRAFT_1313 are separated by 3 nucleotides EX28DRAFT_1313 and EX28DRAFT_1314 are separated by 109 nucleotides EX28DRAFT_1314 and EX28DRAFT_1315 are separated by 31 nucleotides
EX28DRAFT_1311: EX28DRAFT_1311 - phage replication protein O, at 1,315,432 to 1,316,397
_1311
EX28DRAFT_1312: EX28DRAFT_1312 - Protein of unknown function (DUF1019), at 1,316,583 to 1,317,125
_1312
EX28DRAFT_1313: EX28DRAFT_1313 - Cro, at 1,317,129 to 1,317,329
_1313
EX28DRAFT_1314: EX28DRAFT_1314 - SOS-response transcriptional repressors (RecA-mediated autopeptidases), at 1,317,439 to 1,318,155
_1314
EX28DRAFT_1315: EX28DRAFT_1315 - hypothetical protein, at 1,318,187 to 1,318,573
_1315
Position (kb) 1317
1318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.439 kb on - strand at 1316.458 kb on + strand at 1316.486 kb on + strand at 1316.661 kb on + strand, within EX28DRAFT_1312 at 1316.663 kb on + strand, within EX28DRAFT_1312 at 1316.673 kb on + strand, within EX28DRAFT_1312 at 1317.056 kb on + strand, within EX28DRAFT_1312 at 1317.056 kb on + strand, within EX28DRAFT_1312 at 1317.109 kb on + strand at 1317.152 kb on + strand, within EX28DRAFT_1313 at 1317.307 kb on + strand, within EX28DRAFT_1313 at 1317.368 kb on + strand at 1318.165 kb on - strand at 1318.271 kb on + strand, within EX28DRAFT_1315 at 1318.272 kb on - strand, within EX28DRAFT_1315 at 1318.272 kb on - strand, within EX28DRAFT_1315 at 1318.289 kb on + strand, within EX28DRAFT_1315
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 1,316,191 + EX28DRAFT_1311 0.79 +0.9 1,316,191 + EX28DRAFT_1311 0.79 +1.4 1,316,191 + EX28DRAFT_1311 0.79 -1.2 1,316,439 - +0.7 1,316,458 + +0.2 1,316,486 + -0.3 1,316,661 + EX28DRAFT_1312 0.14 -2.1 1,316,663 + EX28DRAFT_1312 0.15 +1.3 1,316,673 + EX28DRAFT_1312 0.17 -0.3 1,317,056 + EX28DRAFT_1312 0.87 -0.3 1,317,056 + EX28DRAFT_1312 0.87 +1.4 1,317,109 + +0.1 1,317,152 + EX28DRAFT_1313 0.11 -3.1 1,317,307 + EX28DRAFT_1313 0.89 -0.9 1,317,368 + +0.0 1,318,165 - -0.5 1,318,271 + EX28DRAFT_1315 0.22 +1.3 1,318,272 - EX28DRAFT_1315 0.22 +1.9 1,318,272 - EX28DRAFT_1315 0.22 +1.0 1,318,289 + EX28DRAFT_1315 0.26 +0.2
Or see this region's nucleotide sequence