Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1141

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1140 and EX28DRAFT_1141 overlap by 16 nucleotidesEX28DRAFT_1141 and EX28DRAFT_1142 overlap by 4 nucleotides EX28DRAFT_1140: EX28DRAFT_1140 - Protein of unknown function (DUF3131), at 1,156,297 to 1,157,691 _1140 EX28DRAFT_1141: EX28DRAFT_1141 - Protein of unknown function (DUF3131), at 1,157,676 to 1,159,223 _1141 EX28DRAFT_1142: EX28DRAFT_1142 - Protein of unknown function (DUF3131), at 1,159,220 to 1,160,551 _1142 Position (kb) 1157 1158 1159 1160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1156.704 kb on + strand, within EX28DRAFT_1140at 1156.705 kb on - strand, within EX28DRAFT_1140at 1156.875 kb on + strand, within EX28DRAFT_1140at 1156.875 kb on + strand, within EX28DRAFT_1140at 1156.875 kb on + strand, within EX28DRAFT_1140at 1156.876 kb on - strand, within EX28DRAFT_1140at 1156.878 kb on - strand, within EX28DRAFT_1140at 1156.878 kb on - strand, within EX28DRAFT_1140at 1157.151 kb on + strand, within EX28DRAFT_1140at 1157.168 kb on + strand, within EX28DRAFT_1140at 1157.369 kb on + strand, within EX28DRAFT_1140at 1157.714 kb on + strandat 1158.044 kb on - strand, within EX28DRAFT_1141at 1158.047 kb on - strand, within EX28DRAFT_1141at 1158.100 kb on + strand, within EX28DRAFT_1141at 1158.203 kb on - strand, within EX28DRAFT_1141at 1158.235 kb on + strand, within EX28DRAFT_1141at 1158.235 kb on + strand, within EX28DRAFT_1141at 1158.236 kb on - strand, within EX28DRAFT_1141at 1158.290 kb on + strand, within EX28DRAFT_1141at 1158.409 kb on + strand, within EX28DRAFT_1141at 1158.418 kb on + strand, within EX28DRAFT_1141at 1158.436 kb on + strand, within EX28DRAFT_1141at 1158.436 kb on + strand, within EX28DRAFT_1141at 1158.436 kb on + strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.437 kb on - strand, within EX28DRAFT_1141at 1158.441 kb on - strand, within EX28DRAFT_1141at 1158.441 kb on - strand, within EX28DRAFT_1141at 1158.452 kb on + strand, within EX28DRAFT_1141at 1158.542 kb on + strand, within EX28DRAFT_1141at 1158.543 kb on - strand, within EX28DRAFT_1141at 1158.574 kb on + strand, within EX28DRAFT_1141at 1158.607 kb on + strand, within EX28DRAFT_1141at 1158.607 kb on + strand, within EX28DRAFT_1141at 1158.607 kb on + strand, within EX28DRAFT_1141at 1158.640 kb on + strand, within EX28DRAFT_1141at 1158.712 kb on + strand, within EX28DRAFT_1141at 1158.806 kb on - strand, within EX28DRAFT_1141at 1158.833 kb on + strand, within EX28DRAFT_1141at 1158.835 kb on + strand, within EX28DRAFT_1141at 1158.835 kb on + strand, within EX28DRAFT_1141at 1158.878 kb on + strand, within EX28DRAFT_1141at 1158.923 kb on + strand, within EX28DRAFT_1141at 1158.924 kb on - strand, within EX28DRAFT_1141at 1158.927 kb on + strand, within EX28DRAFT_1141at 1158.927 kb on + strand, within EX28DRAFT_1141at 1158.928 kb on - strand, within EX28DRAFT_1141at 1159.017 kb on + strand, within EX28DRAFT_1141at 1159.039 kb on + strand, within EX28DRAFT_1141at 1159.039 kb on + strand, within EX28DRAFT_1141at 1159.055 kb on - strand, within EX28DRAFT_1141at 1159.302 kb on + strandat 1159.303 kb on - strandat 1159.366 kb on + strand, within EX28DRAFT_1142at 1159.461 kb on + strand, within EX28DRAFT_1142at 1159.566 kb on + strand, within EX28DRAFT_1142at 1159.566 kb on + strand, within EX28DRAFT_1142at 1159.567 kb on - strand, within EX28DRAFT_1142at 1159.859 kb on - strand, within EX28DRAFT_1142at 1159.870 kb on - strand, within EX28DRAFT_1142at 1160.070 kb on - strand, within EX28DRAFT_1142at 1160.119 kb on - strand, within EX28DRAFT_1142at 1160.216 kb on - strand, within EX28DRAFT_1142

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,156,704 + EX28DRAFT_1140 0.29 -0.6
1,156,705 - EX28DRAFT_1140 0.29 +0.0
1,156,875 + EX28DRAFT_1140 0.41 +1.0
1,156,875 + EX28DRAFT_1140 0.41 +1.3
1,156,875 + EX28DRAFT_1140 0.41 +2.0
1,156,876 - EX28DRAFT_1140 0.42 +0.3
1,156,878 - EX28DRAFT_1140 0.42 -0.7
1,156,878 - EX28DRAFT_1140 0.42 +0.0
1,157,151 + EX28DRAFT_1140 0.61 -0.1
1,157,168 + EX28DRAFT_1140 0.62 +1.0
1,157,369 + EX28DRAFT_1140 0.77 +1.2
1,157,714 + -0.5
1,158,044 - EX28DRAFT_1141 0.24 -4.1
1,158,047 - EX28DRAFT_1141 0.24 -1.6
1,158,100 + EX28DRAFT_1141 0.27 +0.5
1,158,203 - EX28DRAFT_1141 0.34 -1.3
1,158,235 + EX28DRAFT_1141 0.36 -2.0
1,158,235 + EX28DRAFT_1141 0.36 +0.7
1,158,236 - EX28DRAFT_1141 0.36 +1.2
1,158,290 + EX28DRAFT_1141 0.40 -3.0
1,158,409 + EX28DRAFT_1141 0.47 -1.1
1,158,418 + EX28DRAFT_1141 0.48 -0.7
1,158,436 + EX28DRAFT_1141 0.49 +0.3
1,158,436 + EX28DRAFT_1141 0.49 -1.6
1,158,436 + EX28DRAFT_1141 0.49 -0.3
1,158,437 - EX28DRAFT_1141 0.49 -3.2
1,158,437 - EX28DRAFT_1141 0.49 +0.5
1,158,437 - EX28DRAFT_1141 0.49 -1.8
1,158,437 - EX28DRAFT_1141 0.49 -0.9
1,158,441 - EX28DRAFT_1141 0.49 +0.4
1,158,441 - EX28DRAFT_1141 0.49 -1.6
1,158,452 + EX28DRAFT_1141 0.50 -0.2
1,158,542 + EX28DRAFT_1141 0.56 +1.4
1,158,543 - EX28DRAFT_1141 0.56 +0.2
1,158,574 + EX28DRAFT_1141 0.58 -2.0
1,158,607 + EX28DRAFT_1141 0.60 -4.1
1,158,607 + EX28DRAFT_1141 0.60 +0.2
1,158,607 + EX28DRAFT_1141 0.60 -0.4
1,158,640 + EX28DRAFT_1141 0.62 +1.0
1,158,712 + EX28DRAFT_1141 0.67 -0.3
1,158,806 - EX28DRAFT_1141 0.73 +0.1
1,158,833 + EX28DRAFT_1141 0.75 -0.9
1,158,835 + EX28DRAFT_1141 0.75 +0.1
1,158,835 + EX28DRAFT_1141 0.75 +0.9
1,158,878 + EX28DRAFT_1141 0.78 +1.1
1,158,923 + EX28DRAFT_1141 0.81 -0.5
1,158,924 - EX28DRAFT_1141 0.81 +1.3
1,158,927 + EX28DRAFT_1141 0.81 +0.4
1,158,927 + EX28DRAFT_1141 0.81 +1.0
1,158,928 - EX28DRAFT_1141 0.81 -4.4
1,159,017 + EX28DRAFT_1141 0.87 +0.2
1,159,039 + EX28DRAFT_1141 0.88 +1.1
1,159,039 + EX28DRAFT_1141 0.88 +0.8
1,159,055 - EX28DRAFT_1141 0.89 -0.4
1,159,302 + -4.7
1,159,303 - -0.0
1,159,366 + EX28DRAFT_1142 0.11 +1.6
1,159,461 + EX28DRAFT_1142 0.18 -1.0
1,159,566 + EX28DRAFT_1142 0.26 -0.0
1,159,566 + EX28DRAFT_1142 0.26 -1.4
1,159,567 - EX28DRAFT_1142 0.26 -0.1
1,159,859 - EX28DRAFT_1142 0.48 -2.4
1,159,870 - EX28DRAFT_1142 0.49 -3.2
1,160,070 - EX28DRAFT_1142 0.64 -0.1
1,160,119 - EX28DRAFT_1142 0.67 +1.0
1,160,216 - EX28DRAFT_1142 0.75 -0.8

Or see this region's nucleotide sequence