Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0980

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0977 and EX28DRAFT_0978 overlap by 1 nucleotidesEX28DRAFT_0978 and EX28DRAFT_0979 are separated by 12 nucleotidesEX28DRAFT_0979 and EX28DRAFT_0980 are separated by 197 nucleotidesEX28DRAFT_0980 and EX28DRAFT_0981 are separated by 14 nucleotides EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551 _0977 EX28DRAFT_0978: EX28DRAFT_0978 - phage shock protein C (PspC) family protein, at 979,551 to 979,910 _0978 EX28DRAFT_0979: EX28DRAFT_0979 - phage shock protein PspD, at 979,923 to 980,147 _0979 EX28DRAFT_0980: EX28DRAFT_0980 - Glycosidases, at 980,345 to 982,042 _0980 EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349 _0981 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 979.402 kb on + strand, within EX28DRAFT_0977at 979.704 kb on - strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.861 kb on - strand, within EX28DRAFT_0978at 979.909 kb on - strandat 979.957 kb on + strand, within EX28DRAFT_0979at 980.134 kb on - strandat 980.137 kb on + strandat 980.516 kb on + strand, within EX28DRAFT_0980at 980.573 kb on + strand, within EX28DRAFT_0980at 980.800 kb on - strand, within EX28DRAFT_0980at 981.008 kb on + strand, within EX28DRAFT_0980at 981.029 kb on + strand, within EX28DRAFT_0980at 981.030 kb on - strand, within EX28DRAFT_0980at 981.031 kb on + strand, within EX28DRAFT_0980at 981.031 kb on + strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.236 kb on + strand, within EX28DRAFT_0980at 981.528 kb on + strand, within EX28DRAFT_0980at 981.594 kb on + strand, within EX28DRAFT_0980at 981.678 kb on - strand, within EX28DRAFT_0980at 982.155 kb on + strandat 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.288 kb on - strand, within EX28DRAFT_0981at 982.329 kb on + strand, within EX28DRAFT_0981at 982.339 kb on + strand, within EX28DRAFT_0981at 982.340 kb on - strand, within EX28DRAFT_0981at 982.407 kb on - strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.510 kb on + strand, within EX28DRAFT_0981at 982.759 kb on - strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.859 kb on - strand, within EX28DRAFT_0981

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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979,402 + EX28DRAFT_0977 0.33 +0.4
979,704 - EX28DRAFT_0978 0.42 +0.8
979,719 + EX28DRAFT_0978 0.47 +1.0
979,719 + EX28DRAFT_0978 0.47 -1.7
979,719 + EX28DRAFT_0978 0.47 +0.5
979,720 - EX28DRAFT_0978 0.47 +1.0
979,720 - EX28DRAFT_0978 0.47 +0.9
979,720 - EX28DRAFT_0978 0.47 +1.0
979,861 - EX28DRAFT_0978 0.86 +0.4
979,909 - +1.5
979,957 + EX28DRAFT_0979 0.15 -3.9
980,134 - -2.6
980,137 + +3.5
980,516 + EX28DRAFT_0980 0.10 -3.9
980,573 + EX28DRAFT_0980 0.13 -1.2
980,800 - EX28DRAFT_0980 0.27 -3.1
981,008 + EX28DRAFT_0980 0.39 +0.1
981,029 + EX28DRAFT_0980 0.40 +0.3
981,030 - EX28DRAFT_0980 0.40 -2.7
981,031 + EX28DRAFT_0980 0.40 -2.1
981,031 + EX28DRAFT_0980 0.40 +0.2
981,201 - EX28DRAFT_0980 0.50 +1.0
981,201 - EX28DRAFT_0980 0.50 -2.2
981,236 + EX28DRAFT_0980 0.52 -4.0
981,528 + EX28DRAFT_0980 0.70 -0.3
981,594 + EX28DRAFT_0980 0.74 +0.9
981,678 - EX28DRAFT_0980 0.79 -0.7
982,155 + -0.4
982,270 + EX28DRAFT_0981 0.16 +1.6
982,270 + EX28DRAFT_0981 0.16 -2.8
982,270 + EX28DRAFT_0981 0.16 +3.4
982,270 + EX28DRAFT_0981 0.16 +1.1
982,271 - EX28DRAFT_0981 0.17 +1.4
982,271 - EX28DRAFT_0981 0.17 -5.2
982,288 - EX28DRAFT_0981 0.18 -0.5
982,329 + EX28DRAFT_0981 0.21 +0.1
982,339 + EX28DRAFT_0981 0.22 +1.9
982,340 - EX28DRAFT_0981 0.22 +1.7
982,407 - EX28DRAFT_0981 0.27 -1.1
982,423 + EX28DRAFT_0981 0.28 +0.7
982,423 + EX28DRAFT_0981 0.28 +0.4
982,423 + EX28DRAFT_0981 0.28 -3.4
982,424 - EX28DRAFT_0981 0.28 +0.8
982,424 - EX28DRAFT_0981 0.28 +1.0
982,510 + EX28DRAFT_0981 0.35 +0.2
982,759 - EX28DRAFT_0981 0.54 -0.7
982,858 + EX28DRAFT_0981 0.62 +0.2
982,858 + EX28DRAFT_0981 0.62 -0.3
982,859 - EX28DRAFT_0981 0.62 +2.2

Or see this region's nucleotide sequence