Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0964

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0963 and EX28DRAFT_0964 are separated by 270 nucleotidesEX28DRAFT_0964 and EX28DRAFT_0965 are separated by 4 nucleotides EX28DRAFT_0963: EX28DRAFT_0963 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 963,395 to 964,183 _0963 EX28DRAFT_0964: EX28DRAFT_0964 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 964,454 to 967,549 _0964 EX28DRAFT_0965: EX28DRAFT_0965 - ABC transporter transmembrane region, at 967,554 to 968,465 _0965 Position (kb) 964 965 966 967 968Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 964.390 kb on + strandat 964.391 kb on - strandat 964.451 kb on + strandat 964.452 kb on - strandat 964.495 kb on + strandat 964.915 kb on + strand, within EX28DRAFT_0964at 964.915 kb on + strand, within EX28DRAFT_0964at 965.019 kb on - strand, within EX28DRAFT_0964at 965.169 kb on - strand, within EX28DRAFT_0964at 965.214 kb on - strand, within EX28DRAFT_0964at 965.214 kb on - strand, within EX28DRAFT_0964at 965.284 kb on + strand, within EX28DRAFT_0964at 965.285 kb on - strand, within EX28DRAFT_0964at 965.285 kb on - strand, within EX28DRAFT_0964at 965.299 kb on - strand, within EX28DRAFT_0964at 965.418 kb on - strand, within EX28DRAFT_0964at 965.418 kb on - strand, within EX28DRAFT_0964at 965.419 kb on + strand, within EX28DRAFT_0964at 965.419 kb on + strand, within EX28DRAFT_0964at 965.419 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.421 kb on + strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.422 kb on - strand, within EX28DRAFT_0964at 965.731 kb on + strand, within EX28DRAFT_0964at 965.732 kb on - strand, within EX28DRAFT_0964at 965.840 kb on - strand, within EX28DRAFT_0964at 965.840 kb on - strand, within EX28DRAFT_0964at 965.840 kb on - strand, within EX28DRAFT_0964at 965.844 kb on + strand, within EX28DRAFT_0964at 965.845 kb on - strand, within EX28DRAFT_0964at 965.845 kb on - strand, within EX28DRAFT_0964at 965.923 kb on - strand, within EX28DRAFT_0964at 966.063 kb on - strand, within EX28DRAFT_0964at 966.117 kb on - strand, within EX28DRAFT_0964at 966.136 kb on + strand, within EX28DRAFT_0964at 966.137 kb on - strand, within EX28DRAFT_0964at 966.399 kb on - strand, within EX28DRAFT_0964at 966.399 kb on - strand, within EX28DRAFT_0964at 966.487 kb on + strand, within EX28DRAFT_0964at 967.080 kb on + strand, within EX28DRAFT_0964at 967.080 kb on + strand, within EX28DRAFT_0964at 967.081 kb on - strand, within EX28DRAFT_0964at 967.088 kb on + strand, within EX28DRAFT_0964at 967.089 kb on - strand, within EX28DRAFT_0964at 967.168 kb on + strand, within EX28DRAFT_0964at 967.169 kb on - strand, within EX28DRAFT_0964at 967.197 kb on - strand, within EX28DRAFT_0964at 967.197 kb on - strand, within EX28DRAFT_0964at 967.217 kb on - strand, within EX28DRAFT_0964at 967.320 kb on + strandat 967.321 kb on - strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.375 kb on + strandat 967.375 kb on + strandat 967.375 kb on + strandat 967.417 kb on + strandat 967.567 kb on - strandat 967.567 kb on - strandat 967.567 kb on - strandat 967.675 kb on + strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.695 kb on - strand, within EX28DRAFT_0965at 967.804 kb on - strand, within EX28DRAFT_0965at 967.811 kb on + strand, within EX28DRAFT_0965at 967.835 kb on - strand, within EX28DRAFT_0965at 967.874 kb on - strand, within EX28DRAFT_0965at 967.965 kb on + strand, within EX28DRAFT_0965at 968.048 kb on + strand, within EX28DRAFT_0965at 968.049 kb on - strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.138 kb on - strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.238 kb on - strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.257 kb on + strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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964,390 + -1.3
964,391 - -0.2
964,451 + +0.5
964,452 - -1.6
964,495 + +1.3
964,915 + EX28DRAFT_0964 0.15 -2.4
964,915 + EX28DRAFT_0964 0.15 -4.0
965,019 - EX28DRAFT_0964 0.18 -0.2
965,169 - EX28DRAFT_0964 0.23 +0.1
965,214 - EX28DRAFT_0964 0.25 +1.2
965,214 - EX28DRAFT_0964 0.25 -0.7
965,284 + EX28DRAFT_0964 0.27 -0.5
965,285 - EX28DRAFT_0964 0.27 +1.1
965,285 - EX28DRAFT_0964 0.27 +0.7
965,299 - EX28DRAFT_0964 0.27 +0.3
965,418 - EX28DRAFT_0964 0.31 -0.8
965,418 - EX28DRAFT_0964 0.31 +1.4
965,419 + EX28DRAFT_0964 0.31 -0.1
965,419 + EX28DRAFT_0964 0.31 -3.4
965,419 + EX28DRAFT_0964 0.31 -0.5
965,421 + EX28DRAFT_0964 0.31 -0.7
965,421 + EX28DRAFT_0964 0.31 +0.7
965,421 + EX28DRAFT_0964 0.31 -1.8
965,421 + EX28DRAFT_0964 0.31 +0.4
965,422 - EX28DRAFT_0964 0.31 -1.7
965,422 - EX28DRAFT_0964 0.31 -3.7
965,422 - EX28DRAFT_0964 0.31 -0.0
965,422 - EX28DRAFT_0964 0.31 -0.2
965,731 + EX28DRAFT_0964 0.41 +0.7
965,732 - EX28DRAFT_0964 0.41 -0.2
965,840 - EX28DRAFT_0964 0.45 -0.6
965,840 - EX28DRAFT_0964 0.45 -0.2
965,840 - EX28DRAFT_0964 0.45 -0.2
965,844 + EX28DRAFT_0964 0.45 -0.2
965,845 - EX28DRAFT_0964 0.45 -2.0
965,845 - EX28DRAFT_0964 0.45 -2.3
965,923 - EX28DRAFT_0964 0.47 -4.8
966,063 - EX28DRAFT_0964 0.52 +0.2
966,117 - EX28DRAFT_0964 0.54 -0.7
966,136 + EX28DRAFT_0964 0.54 -0.1
966,137 - EX28DRAFT_0964 0.54 -4.0
966,399 - EX28DRAFT_0964 0.63 +0.4
966,399 - EX28DRAFT_0964 0.63 -3.3
966,487 + EX28DRAFT_0964 0.66 -0.2
967,080 + EX28DRAFT_0964 0.85 +0.0
967,080 + EX28DRAFT_0964 0.85 +1.5
967,081 - EX28DRAFT_0964 0.85 +1.1
967,088 + EX28DRAFT_0964 0.85 +1.3
967,089 - EX28DRAFT_0964 0.85 -1.4
967,168 + EX28DRAFT_0964 0.88 -1.7
967,169 - EX28DRAFT_0964 0.88 -1.0
967,197 - EX28DRAFT_0964 0.89 +0.3
967,197 - EX28DRAFT_0964 0.89 -3.1
967,217 - EX28DRAFT_0964 0.89 -3.4
967,320 + -4.0
967,321 - +0.6
967,330 + -0.3
967,330 + -3.9
967,330 + +0.4
967,330 + -1.3
967,375 + -0.3
967,375 + +0.8
967,375 + +1.9
967,417 + -0.3
967,567 - -1.1
967,567 - +1.3
967,567 - -1.1
967,675 + EX28DRAFT_0965 0.13 -0.3
967,676 - EX28DRAFT_0965 0.13 -0.2
967,676 - EX28DRAFT_0965 0.13 +1.3
967,676 - EX28DRAFT_0965 0.13 -1.6
967,695 - EX28DRAFT_0965 0.15 +1.2
967,804 - EX28DRAFT_0965 0.27 -2.8
967,811 + EX28DRAFT_0965 0.28 -2.8
967,835 - EX28DRAFT_0965 0.31 -4.3
967,874 - EX28DRAFT_0965 0.35 -0.2
967,965 + EX28DRAFT_0965 0.45 -0.1
968,048 + EX28DRAFT_0965 0.54 -1.4
968,049 - EX28DRAFT_0965 0.54 -1.3
968,051 + EX28DRAFT_0965 0.54 +0.4
968,051 + EX28DRAFT_0965 0.54 +0.4
968,051 + EX28DRAFT_0965 0.54 +1.1
968,087 - EX28DRAFT_0965 0.58 -0.8
968,087 - EX28DRAFT_0965 0.58 -4.3
968,138 - EX28DRAFT_0965 0.64 -2.3
968,237 + EX28DRAFT_0965 0.75 -0.8
968,237 + EX28DRAFT_0965 0.75 +1.0
968,238 - EX28DRAFT_0965 0.75 +0.6
968,244 + EX28DRAFT_0965 0.76 -0.3
968,244 + EX28DRAFT_0965 0.76 -0.8
968,245 - EX28DRAFT_0965 0.76 -0.5
968,245 - EX28DRAFT_0965 0.76 -3.1
968,257 + EX28DRAFT_0965 0.77 -0.1
968,258 - EX28DRAFT_0965 0.77 -0.2
968,258 - EX28DRAFT_0965 0.77 -1.1

Or see this region's nucleotide sequence