Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0893 and EX28DRAFT_0894 are separated by 55 nucleotides EX28DRAFT_0894 and EX28DRAFT_0895 are separated by 3 nucleotides EX28DRAFT_0895 and EX28DRAFT_0896 are separated by 99 nucleotides
EX28DRAFT_0893: EX28DRAFT_0893 - Phage capsid scaffolding protein (GPO) serine peptidase, at 901,917 to 902,771
_0893
EX28DRAFT_0894: EX28DRAFT_0894 - phage major capsid protein, P2 family, at 902,827 to 903,921
_0894
EX28DRAFT_0895: EX28DRAFT_0895 - Phage small terminase subunit, at 903,925 to 904,680
_0895
EX28DRAFT_0896: EX28DRAFT_0896 - Phage head completion protein (GPL), at 904,780 to 905,286
_0896
Position (kb) 902
903
904 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 901.831 kb on + strand at 901.877 kb on + strand at 902.061 kb on - strand, within EX28DRAFT_0893 at 902.061 kb on - strand, within EX28DRAFT_0893 at 902.169 kb on + strand, within EX28DRAFT_0893 at 902.170 kb on - strand, within EX28DRAFT_0893 at 902.329 kb on - strand, within EX28DRAFT_0893 at 902.624 kb on + strand, within EX28DRAFT_0893 at 902.805 kb on + strand at 902.806 kb on - strand at 902.806 kb on - strand at 902.806 kb on - strand at 902.806 kb on - strand at 902.806 kb on - strand at 902.847 kb on + strand at 903.123 kb on + strand, within EX28DRAFT_0894 at 903.124 kb on - strand, within EX28DRAFT_0894 at 903.127 kb on + strand, within EX28DRAFT_0894 at 903.402 kb on + strand, within EX28DRAFT_0894 at 903.559 kb on + strand, within EX28DRAFT_0894 at 903.560 kb on - strand, within EX28DRAFT_0894 at 903.560 kb on - strand, within EX28DRAFT_0894 at 903.664 kb on + strand, within EX28DRAFT_0894 at 903.720 kb on + strand, within EX28DRAFT_0894 at 903.803 kb on - strand, within EX28DRAFT_0894 at 903.920 kb on - strand at 904.117 kb on + strand, within EX28DRAFT_0895 at 904.118 kb on - strand, within EX28DRAFT_0895 at 904.252 kb on + strand, within EX28DRAFT_0895 at 904.292 kb on - strand, within EX28DRAFT_0895 at 904.508 kb on + strand, within EX28DRAFT_0895 at 904.795 kb on - strand at 904.839 kb on - strand, within EX28DRAFT_0896
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 901,831 + -0.1 901,877 + -3.6 902,061 - EX28DRAFT_0893 0.17 +0.2 902,061 - EX28DRAFT_0893 0.17 -1.1 902,169 + EX28DRAFT_0893 0.29 +0.9 902,170 - EX28DRAFT_0893 0.30 -1.3 902,329 - EX28DRAFT_0893 0.48 -1.1 902,624 + EX28DRAFT_0893 0.83 -0.1 902,805 + +0.3 902,806 - -0.3 902,806 - +0.8 902,806 - -0.1 902,806 - -0.1 902,806 - +0.5 902,847 + +5.2 903,123 + EX28DRAFT_0894 0.27 +2.1 903,124 - EX28DRAFT_0894 0.27 +2.1 903,127 + EX28DRAFT_0894 0.27 -0.0 903,402 + EX28DRAFT_0894 0.53 +1.0 903,559 + EX28DRAFT_0894 0.67 +0.9 903,560 - EX28DRAFT_0894 0.67 +1.5 903,560 - EX28DRAFT_0894 0.67 +0.7 903,664 + EX28DRAFT_0894 0.76 -4.2 903,720 + EX28DRAFT_0894 0.82 -2.3 903,803 - EX28DRAFT_0894 0.89 -1.8 903,920 - -3.3 904,117 + EX28DRAFT_0895 0.25 +1.6 904,118 - EX28DRAFT_0895 0.26 -2.0 904,252 + EX28DRAFT_0895 0.43 +0.2 904,292 - EX28DRAFT_0895 0.49 +2.2 904,508 + EX28DRAFT_0895 0.77 +1.5 904,795 - +1.1 904,839 - EX28DRAFT_0896 0.12 +0.2
Or see this region's nucleotide sequence