Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0833 and EX28DRAFT_0834 are separated by 36 nucleotides EX28DRAFT_0834 and EX28DRAFT_0835 are separated by 87 nucleotides EX28DRAFT_0835 and EX28DRAFT_0836 are separated by 270 nucleotides EX28DRAFT_0836 and EX28DRAFT_0837 are separated by 177 nucleotides
EX28DRAFT_0833: EX28DRAFT_0833 - Uncharacterized conserved protein, at 836,895 to 837,704
_0833
EX28DRAFT_0834: EX28DRAFT_0834 - 3-deoxy-8-phosphooctulonate synthase, at 837,741 to 838,595
_0834
EX28DRAFT_0835: EX28DRAFT_0835 - calcium/proton exchanger, at 838,683 to 839,783
_0835
EX28DRAFT_0836: EX28DRAFT_0836 - Putative cation transport regulator, at 840,054 to 840,284
_0836
EX28DRAFT_0837: EX28DRAFT_0837 - Uncharacterized protein involved in cation transport, at 840,462 to 841,157
_0837
Position (kb) 838
839
840 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 839.327 kb on + strand, within EX28DRAFT_0835 at 839.357 kb on - strand, within EX28DRAFT_0835 at 839.364 kb on - strand, within EX28DRAFT_0835 at 839.382 kb on - strand, within EX28DRAFT_0835 at 839.384 kb on - strand, within EX28DRAFT_0835 at 839.451 kb on - strand, within EX28DRAFT_0835 at 839.533 kb on - strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.654 kb on + strand, within EX28DRAFT_0835 at 839.655 kb on - strand, within EX28DRAFT_0835 at 839.655 kb on - strand, within EX28DRAFT_0835 at 839.661 kb on - strand, within EX28DRAFT_0835 at 840.122 kb on + strand, within EX28DRAFT_0836 at 840.123 kb on - strand, within EX28DRAFT_0836 at 840.159 kb on + strand, within EX28DRAFT_0836 at 840.160 kb on - strand, within EX28DRAFT_0836 at 840.264 kb on - strand at 840.264 kb on - strand at 840.282 kb on + strand at 840.282 kb on + strand at 840.367 kb on - strand at 840.421 kb on + strand at 840.421 kb on + strand at 840.422 kb on - strand at 840.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 839,327 + EX28DRAFT_0835 0.58 -1.7 839,357 - EX28DRAFT_0835 0.61 +1.1 839,364 - EX28DRAFT_0835 0.62 -2.4 839,382 - EX28DRAFT_0835 0.63 -0.7 839,384 - EX28DRAFT_0835 0.64 +1.3 839,451 - EX28DRAFT_0835 0.70 +0.6 839,533 - EX28DRAFT_0835 0.77 -0.3 839,559 + EX28DRAFT_0835 0.80 -3.3 839,559 + EX28DRAFT_0835 0.80 -2.6 839,559 + EX28DRAFT_0835 0.80 -0.3 839,654 + EX28DRAFT_0835 0.88 +1.4 839,655 - EX28DRAFT_0835 0.88 -0.3 839,655 - EX28DRAFT_0835 0.88 +2.5 839,661 - EX28DRAFT_0835 0.89 -5.0 840,122 + EX28DRAFT_0836 0.29 -0.6 840,123 - EX28DRAFT_0836 0.30 +0.5 840,159 + EX28DRAFT_0836 0.45 -0.6 840,160 - EX28DRAFT_0836 0.46 -0.9 840,264 - +1.0 840,264 - -0.1 840,282 + -0.3 840,282 + +0.7 840,367 - -1.5 840,421 + -0.3 840,421 + +0.2 840,422 - -0.3 840,497 + -0.2
Or see this region's nucleotide sequence