Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0824 and EX28DRAFT_0825 overlap by 15 nucleotides EX28DRAFT_0825 and EX28DRAFT_0826 are separated by 124 nucleotides
EX28DRAFT_0824: EX28DRAFT_0824 - Predicted transcriptional regulators, at 827,692 to 828,750
_0824
EX28DRAFT_0825: EX28DRAFT_0825 - high affinity sulphate transporter 1, at 828,736 to 830,415
_0825
EX28DRAFT_0826: EX28DRAFT_0826 - ribose-phosphate pyrophosphokinase, at 830,540 to 831,487
_0826
Position (kb) 828
829
830
831 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 827.756 kb on - strand at 827.972 kb on + strand, within EX28DRAFT_0824 at 827.972 kb on + strand, within EX28DRAFT_0824 at 827.973 kb on - strand, within EX28DRAFT_0824 at 827.973 kb on - strand, within EX28DRAFT_0824 at 827.973 kb on - strand, within EX28DRAFT_0824 at 827.976 kb on + strand, within EX28DRAFT_0824 at 827.977 kb on - strand, within EX28DRAFT_0824 at 828.065 kb on + strand, within EX28DRAFT_0824 at 828.065 kb on + strand, within EX28DRAFT_0824 at 828.072 kb on + strand, within EX28DRAFT_0824 at 828.072 kb on + strand, within EX28DRAFT_0824 at 828.072 kb on + strand, within EX28DRAFT_0824 at 828.072 kb on + strand, within EX28DRAFT_0824 at 828.072 kb on + strand, within EX28DRAFT_0824 at 828.073 kb on - strand, within EX28DRAFT_0824 at 828.073 kb on - strand, within EX28DRAFT_0824 at 828.073 kb on - strand, within EX28DRAFT_0824 at 828.076 kb on + strand, within EX28DRAFT_0824 at 828.195 kb on + strand, within EX28DRAFT_0824 at 828.195 kb on + strand, within EX28DRAFT_0824 at 828.195 kb on + strand, within EX28DRAFT_0824 at 828.195 kb on + strand, within EX28DRAFT_0824 at 828.195 kb on + strand, within EX28DRAFT_0824 at 828.196 kb on - strand, within EX28DRAFT_0824 at 828.388 kb on - strand, within EX28DRAFT_0824 at 828.398 kb on + strand, within EX28DRAFT_0824 at 828.399 kb on - strand, within EX28DRAFT_0824 at 828.409 kb on + strand, within EX28DRAFT_0824 at 828.409 kb on + strand, within EX28DRAFT_0824 at 828.410 kb on - strand, within EX28DRAFT_0824 at 828.410 kb on - strand, within EX28DRAFT_0824 at 828.448 kb on + strand, within EX28DRAFT_0824 at 828.491 kb on + strand, within EX28DRAFT_0824 at 828.578 kb on - strand, within EX28DRAFT_0824 at 828.770 kb on + strand at 828.771 kb on - strand at 829.426 kb on - strand, within EX28DRAFT_0825 at 829.563 kb on + strand, within EX28DRAFT_0825 at 829.701 kb on - strand, within EX28DRAFT_0825 at 829.744 kb on - strand, within EX28DRAFT_0825 at 829.916 kb on + strand, within EX28DRAFT_0825 at 829.980 kb on + strand, within EX28DRAFT_0825 at 829.983 kb on + strand, within EX28DRAFT_0825 at 829.983 kb on + strand, within EX28DRAFT_0825 at 829.983 kb on + strand, within EX28DRAFT_0825 at 830.025 kb on + strand, within EX28DRAFT_0825 at 830.026 kb on - strand, within EX28DRAFT_0825 at 830.027 kb on + strand, within EX28DRAFT_0825 at 830.027 kb on + strand, within EX28DRAFT_0825 at 830.028 kb on - strand, within EX28DRAFT_0825 at 830.345 kb on + strand at 830.419 kb on + strand at 830.420 kb on - strand at 830.423 kb on + strand at 830.424 kb on - strand at 830.433 kb on - strand at 830.482 kb on - strand at 830.482 kb on - strand at 830.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 827,756 - -0.2 827,972 + EX28DRAFT_0824 0.26 +0.4 827,972 + EX28DRAFT_0824 0.26 -0.7 827,973 - EX28DRAFT_0824 0.27 -1.2 827,973 - EX28DRAFT_0824 0.27 -0.3 827,973 - EX28DRAFT_0824 0.27 -2.4 827,976 + EX28DRAFT_0824 0.27 +0.2 827,977 - EX28DRAFT_0824 0.27 -1.0 828,065 + EX28DRAFT_0824 0.35 -0.3 828,065 + EX28DRAFT_0824 0.35 -0.1 828,072 + EX28DRAFT_0824 0.36 +1.0 828,072 + EX28DRAFT_0824 0.36 +1.4 828,072 + EX28DRAFT_0824 0.36 +0.4 828,072 + EX28DRAFT_0824 0.36 -2.8 828,072 + EX28DRAFT_0824 0.36 -0.3 828,073 - EX28DRAFT_0824 0.36 -0.7 828,073 - EX28DRAFT_0824 0.36 +0.4 828,073 - EX28DRAFT_0824 0.36 +0.3 828,076 + EX28DRAFT_0824 0.36 -0.3 828,195 + EX28DRAFT_0824 0.47 +1.5 828,195 + EX28DRAFT_0824 0.47 +0.5 828,195 + EX28DRAFT_0824 0.47 +1.6 828,195 + EX28DRAFT_0824 0.47 +2.0 828,195 + EX28DRAFT_0824 0.47 -2.7 828,196 - EX28DRAFT_0824 0.48 +0.1 828,388 - EX28DRAFT_0824 0.66 +0.5 828,398 + EX28DRAFT_0824 0.67 +1.2 828,399 - EX28DRAFT_0824 0.67 -1.5 828,409 + EX28DRAFT_0824 0.68 +0.2 828,409 + EX28DRAFT_0824 0.68 +0.1 828,410 - EX28DRAFT_0824 0.68 -2.1 828,410 - EX28DRAFT_0824 0.68 -1.4 828,448 + EX28DRAFT_0824 0.71 -0.4 828,491 + EX28DRAFT_0824 0.75 -1.6 828,578 - EX28DRAFT_0824 0.84 -0.6 828,770 + -0.9 828,771 - -0.8 829,426 - EX28DRAFT_0825 0.41 -0.3 829,563 + EX28DRAFT_0825 0.49 +0.0 829,701 - EX28DRAFT_0825 0.57 +0.1 829,744 - EX28DRAFT_0825 0.60 -4.3 829,916 + EX28DRAFT_0825 0.70 -0.5 829,980 + EX28DRAFT_0825 0.74 -2.4 829,983 + EX28DRAFT_0825 0.74 +0.5 829,983 + EX28DRAFT_0825 0.74 +0.1 829,983 + EX28DRAFT_0825 0.74 -4.3 830,025 + EX28DRAFT_0825 0.77 -0.1 830,026 - EX28DRAFT_0825 0.77 -2.1 830,027 + EX28DRAFT_0825 0.77 -0.7 830,027 + EX28DRAFT_0825 0.77 -0.9 830,028 - EX28DRAFT_0825 0.77 +1.1 830,345 + +0.0 830,419 + -0.7 830,420 - +0.9 830,423 + -0.4 830,424 - +0.4 830,433 - -2.6 830,482 - -3.2 830,482 - +2.5 830,482 - -0.1
Or see this region's nucleotide sequence