Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0738 and EX28DRAFT_0739 are separated by 398 nucleotides EX28DRAFT_0739 and EX28DRAFT_0740 are separated by 54 nucleotides EX28DRAFT_0740 and EX28DRAFT_0741 are separated by 12 nucleotides EX28DRAFT_0741 and EX28DRAFT_0742 are separated by 46 nucleotides
EX28DRAFT_0738: EX28DRAFT_0738 - Predicted membrane protein, at 735,391 to 735,957
_0738
EX28DRAFT_0739: EX28DRAFT_0739 - Predicted membrane protein, at 736,356 to 736,814
_0739
EX28DRAFT_0740: EX28DRAFT_0740 - PTS system, mannose/fructose/sorbose family, IID component, at 736,869 to 737,720
_0740
EX28DRAFT_0741: EX28DRAFT_0741 - PTS system, mannose/fructose/sorbose family, IIC component, at 737,733 to 738,533
_0741
EX28DRAFT_0742: EX28DRAFT_0742 - PTS system, mannose/fructose/sorbose family, IIB component, at 738,580 to 739,545
_0742
Position (kb) 736
737
738 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 735.984 kb on + strand at 735.985 kb on - strand at 736.022 kb on + strand at 736.026 kb on + strand at 736.027 kb on - strand at 736.027 kb on - strand at 736.053 kb on + strand at 736.054 kb on - strand at 736.054 kb on - strand at 736.169 kb on - strand at 736.532 kb on + strand, within EX28DRAFT_0739 at 736.593 kb on + strand, within EX28DRAFT_0739 at 736.593 kb on + strand, within EX28DRAFT_0739 at 736.611 kb on + strand, within EX28DRAFT_0739 at 736.639 kb on + strand, within EX28DRAFT_0739 at 736.649 kb on + strand, within EX28DRAFT_0739 at 736.753 kb on + strand, within EX28DRAFT_0739 at 736.794 kb on + strand at 736.858 kb on - strand at 736.870 kb on + strand at 736.870 kb on + strand at 736.871 kb on - strand at 737.231 kb on - strand, within EX28DRAFT_0740 at 737.231 kb on - strand, within EX28DRAFT_0740 at 737.491 kb on + strand, within EX28DRAFT_0740 at 737.491 kb on + strand, within EX28DRAFT_0740 at 737.492 kb on - strand, within EX28DRAFT_0740 at 737.492 kb on - strand, within EX28DRAFT_0740 at 737.612 kb on + strand, within EX28DRAFT_0740 at 737.646 kb on - strand at 737.646 kb on - strand at 737.712 kb on - strand at 737.801 kb on - strand at 737.821 kb on + strand, within EX28DRAFT_0741 at 737.902 kb on + strand, within EX28DRAFT_0741 at 737.903 kb on - strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.965 kb on - strand, within EX28DRAFT_0741 at 738.045 kb on - strand, within EX28DRAFT_0741 at 738.111 kb on + strand, within EX28DRAFT_0741 at 738.112 kb on - strand, within EX28DRAFT_0741 at 738.112 kb on - strand, within EX28DRAFT_0741 at 738.186 kb on - strand, within EX28DRAFT_0741 at 738.192 kb on - strand, within EX28DRAFT_0741 at 738.425 kb on + strand, within EX28DRAFT_0741 at 738.485 kb on + strand at 738.486 kb on - strand at 738.524 kb on + strand at 738.546 kb on - strand at 738.548 kb on + strand at 738.548 kb on + strand at 738.549 kb on - strand at 738.549 kb on - strand at 738.549 kb on - strand at 738.559 kb on + strand at 738.559 kb on + strand at 738.559 kb on + strand at 738.560 kb on - strand at 738.560 kb on - strand at 738.562 kb on - strand at 738.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 735,984 + -3.1 735,985 - +0.7 736,022 + -0.9 736,026 + -5.5 736,027 - -2.1 736,027 - -0.0 736,053 + -1.3 736,054 - +0.0 736,054 - +1.4 736,169 - +0.4 736,532 + EX28DRAFT_0739 0.38 -1.8 736,593 + EX28DRAFT_0739 0.52 -1.0 736,593 + EX28DRAFT_0739 0.52 -1.3 736,611 + EX28DRAFT_0739 0.56 +1.0 736,639 + EX28DRAFT_0739 0.62 +2.2 736,649 + EX28DRAFT_0739 0.64 -1.1 736,753 + EX28DRAFT_0739 0.86 +0.5 736,794 + -2.5 736,858 - -4.1 736,870 + +0.2 736,870 + +0.1 736,871 - -3.1 737,231 - EX28DRAFT_0740 0.42 -1.3 737,231 - EX28DRAFT_0740 0.42 +0.3 737,491 + EX28DRAFT_0740 0.73 +1.1 737,491 + EX28DRAFT_0740 0.73 -0.2 737,492 - EX28DRAFT_0740 0.73 -0.6 737,492 - EX28DRAFT_0740 0.73 +0.6 737,612 + EX28DRAFT_0740 0.87 -3.0 737,646 - +1.9 737,646 - +0.3 737,712 - +1.7 737,801 - -0.6 737,821 + EX28DRAFT_0741 0.11 -1.4 737,902 + EX28DRAFT_0741 0.21 +1.0 737,903 - EX28DRAFT_0741 0.21 +0.3 737,964 + EX28DRAFT_0741 0.29 -0.5 737,964 + EX28DRAFT_0741 0.29 +0.4 737,964 + EX28DRAFT_0741 0.29 -2.0 737,965 - EX28DRAFT_0741 0.29 +0.1 738,045 - EX28DRAFT_0741 0.39 +1.0 738,111 + EX28DRAFT_0741 0.47 +1.1 738,112 - EX28DRAFT_0741 0.47 +0.3 738,112 - EX28DRAFT_0741 0.47 -2.7 738,186 - EX28DRAFT_0741 0.57 +0.6 738,192 - EX28DRAFT_0741 0.57 -1.9 738,425 + EX28DRAFT_0741 0.86 +0.3 738,485 + -2.4 738,486 - -0.2 738,524 + -0.0 738,546 - +0.8 738,548 + -3.4 738,548 + +0.1 738,549 - +0.3 738,549 - +1.5 738,549 - +0.4 738,559 + -3.3 738,559 + +0.1 738,559 + -0.2 738,560 - -1.3 738,560 - -3.3 738,562 - +1.4 738,581 + -0.3
Or see this region's nucleotide sequence