Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0727 and EX28DRAFT_0728 are separated by 50 nucleotides EX28DRAFT_0728 and EX28DRAFT_0729 are separated by 179 nucleotides
EX28DRAFT_0727: EX28DRAFT_0727 - Zn-dependent protease with chaperone function, at 726,415 to 727,296
_0727
EX28DRAFT_0728: EX28DRAFT_0728 - Major Facilitator Superfamily, at 727,347 to 728,720
_0728
EX28DRAFT_0729: EX28DRAFT_0729 - transcriptional regulator, IclR family, at 728,900 to 729,691
_0729
Position (kb) 727
728
729 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 726.479 kb on + strand at 726.633 kb on + strand, within EX28DRAFT_0727 at 726.654 kb on + strand, within EX28DRAFT_0727 at 726.654 kb on + strand, within EX28DRAFT_0727 at 726.655 kb on - strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.159 kb on + strand, within EX28DRAFT_0727 at 727.233 kb on + strand at 727.233 kb on + strand at 727.234 kb on - strand at 727.234 kb on - strand at 727.234 kb on - strand at 727.234 kb on - strand at 727.260 kb on + strand at 727.285 kb on + strand at 727.294 kb on + strand at 727.295 kb on - strand at 727.740 kb on + strand, within EX28DRAFT_0728 at 727.741 kb on - strand, within EX28DRAFT_0728 at 727.923 kb on - strand, within EX28DRAFT_0728 at 727.923 kb on - strand, within EX28DRAFT_0728 at 727.944 kb on + strand, within EX28DRAFT_0728 at 728.169 kb on + strand, within EX28DRAFT_0728 at 728.196 kb on - strand, within EX28DRAFT_0728 at 728.199 kb on - strand, within EX28DRAFT_0728 at 728.199 kb on - strand, within EX28DRAFT_0728 at 728.246 kb on + strand, within EX28DRAFT_0728 at 728.246 kb on + strand, within EX28DRAFT_0728 at 728.247 kb on - strand, within EX28DRAFT_0728 at 728.406 kb on - strand, within EX28DRAFT_0728 at 728.430 kb on + strand, within EX28DRAFT_0728 at 728.430 kb on + strand, within EX28DRAFT_0728 at 728.471 kb on - strand, within EX28DRAFT_0728 at 728.493 kb on - strand, within EX28DRAFT_0728 at 728.649 kb on - strand at 728.669 kb on + strand at 728.669 kb on + strand at 728.670 kb on - strand at 728.677 kb on + strand at 728.722 kb on - strand at 728.763 kb on + strand at 728.788 kb on + strand at 728.849 kb on - strand at 728.875 kb on + strand at 728.875 kb on + strand at 728.897 kb on + strand at 728.967 kb on + strand at 728.994 kb on + strand, within EX28DRAFT_0729 at 728.998 kb on + strand, within EX28DRAFT_0729 at 729.032 kb on - strand, within EX28DRAFT_0729 at 729.042 kb on + strand, within EX28DRAFT_0729 at 729.043 kb on - strand, within EX28DRAFT_0729 at 729.054 kb on + strand, within EX28DRAFT_0729 at 729.077 kb on + strand, within EX28DRAFT_0729 at 729.257 kb on + strand, within EX28DRAFT_0729 at 729.257 kb on + strand, within EX28DRAFT_0729 at 729.281 kb on + strand, within EX28DRAFT_0729 at 729.281 kb on + strand, within EX28DRAFT_0729 at 729.282 kb on - strand, within EX28DRAFT_0729 at 729.297 kb on - strand, within EX28DRAFT_0729 at 729.556 kb on - strand, within EX28DRAFT_0729 at 729.570 kb on + strand, within EX28DRAFT_0729 at 729.571 kb on - strand, within EX28DRAFT_0729 at 729.575 kb on - strand, within EX28DRAFT_0729 at 729.592 kb on - strand, within EX28DRAFT_0729 at 729.620 kb on + strand at 729.620 kb on + strand at 729.621 kb on - strand at 729.650 kb on - strand at 729.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 726,479 + -0.2 726,633 + EX28DRAFT_0727 0.25 +0.3 726,654 + EX28DRAFT_0727 0.27 -0.2 726,654 + EX28DRAFT_0727 0.27 +1.6 726,655 - EX28DRAFT_0727 0.27 +0.1 727,159 + EX28DRAFT_0727 0.84 +1.1 727,159 + EX28DRAFT_0727 0.84 +1.1 727,159 + EX28DRAFT_0727 0.84 +1.0 727,159 + EX28DRAFT_0727 0.84 +0.2 727,233 + -0.6 727,233 + -1.0 727,234 - +0.8 727,234 - -1.3 727,234 - -0.4 727,234 - +0.7 727,260 + -3.5 727,285 + +1.2 727,294 + -0.2 727,295 - -3.6 727,740 + EX28DRAFT_0728 0.29 -0.5 727,741 - EX28DRAFT_0728 0.29 +1.7 727,923 - EX28DRAFT_0728 0.42 +0.3 727,923 - EX28DRAFT_0728 0.42 +1.2 727,944 + EX28DRAFT_0728 0.43 +0.3 728,169 + EX28DRAFT_0728 0.60 +1.3 728,196 - EX28DRAFT_0728 0.62 +0.8 728,199 - EX28DRAFT_0728 0.62 -3.5 728,199 - EX28DRAFT_0728 0.62 +4.5 728,246 + EX28DRAFT_0728 0.65 +1.1 728,246 + EX28DRAFT_0728 0.65 -1.7 728,247 - EX28DRAFT_0728 0.66 -1.4 728,406 - EX28DRAFT_0728 0.77 +0.5 728,430 + EX28DRAFT_0728 0.79 +0.7 728,430 + EX28DRAFT_0728 0.79 -3.6 728,471 - EX28DRAFT_0728 0.82 +0.4 728,493 - EX28DRAFT_0728 0.83 +0.7 728,649 - -3.5 728,669 + -0.9 728,669 + +0.3 728,670 - -0.5 728,677 + +0.1 728,722 - -0.4 728,763 + -5.4 728,788 + +0.3 728,849 - -1.0 728,875 + -0.4 728,875 + -1.0 728,897 + -2.0 728,967 + -4.5 728,994 + EX28DRAFT_0729 0.12 +0.0 728,998 + EX28DRAFT_0729 0.12 -0.7 729,032 - EX28DRAFT_0729 0.17 -4.9 729,042 + EX28DRAFT_0729 0.18 -0.9 729,043 - EX28DRAFT_0729 0.18 +1.1 729,054 + EX28DRAFT_0729 0.19 -1.3 729,077 + EX28DRAFT_0729 0.22 -0.5 729,257 + EX28DRAFT_0729 0.45 -2.8 729,257 + EX28DRAFT_0729 0.45 -5.1 729,281 + EX28DRAFT_0729 0.48 -0.4 729,281 + EX28DRAFT_0729 0.48 +4.4 729,282 - EX28DRAFT_0729 0.48 +1.0 729,297 - EX28DRAFT_0729 0.50 +0.1 729,556 - EX28DRAFT_0729 0.83 +0.3 729,570 + EX28DRAFT_0729 0.85 +0.8 729,571 - EX28DRAFT_0729 0.85 +0.7 729,575 - EX28DRAFT_0729 0.85 +0.7 729,592 - EX28DRAFT_0729 0.87 -0.7 729,620 + +0.2 729,620 + +0.4 729,621 - -0.5 729,650 - -3.8 729,704 + -1.2
Or see this region's nucleotide sequence