Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0631 and EX28DRAFT_0632 are separated by 66 nucleotides EX28DRAFT_0632 and EX28DRAFT_0633 are separated by 466 nucleotides
EX28DRAFT_0631: EX28DRAFT_0631 - DNA-binding HTH domain-containing proteins, at 627,924 to 628,646
_0631
EX28DRAFT_0632: EX28DRAFT_0632 - Protein of unknown function (DUF2594), at 628,713 to 628,937
_0632
EX28DRAFT_0633: EX28DRAFT_0633 - two component transcriptional regulator, LuxR family, at 629,404 to 630,060
_0633
Position (kb) 628
629 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 627.732 kb on + strand at 627.806 kb on - strand at 627.815 kb on - strand at 627.869 kb on + strand at 627.870 kb on - strand at 627.870 kb on - strand at 627.870 kb on - strand at 627.870 kb on - strand at 627.875 kb on - strand at 627.876 kb on + strand at 627.885 kb on + strand at 627.886 kb on - strand at 627.888 kb on + strand at 627.889 kb on - strand at 627.896 kb on - strand at 627.896 kb on - strand at 627.896 kb on - strand at 627.917 kb on - strand at 627.919 kb on + strand at 627.920 kb on - strand at 627.920 kb on - strand at 627.920 kb on - strand at 627.920 kb on - strand at 627.923 kb on + strand at 627.924 kb on - strand at 627.924 kb on - strand at 627.924 kb on - strand at 628.000 kb on + strand, within EX28DRAFT_0631 at 628.000 kb on + strand, within EX28DRAFT_0631 at 628.000 kb on + strand, within EX28DRAFT_0631 at 628.000 kb on + strand, within EX28DRAFT_0631 at 628.001 kb on - strand, within EX28DRAFT_0631 at 628.013 kb on - strand, within EX28DRAFT_0631 at 628.013 kb on - strand, within EX28DRAFT_0631 at 628.079 kb on + strand, within EX28DRAFT_0631 at 628.088 kb on + strand, within EX28DRAFT_0631 at 628.110 kb on + strand, within EX28DRAFT_0631 at 628.110 kb on + strand, within EX28DRAFT_0631 at 628.134 kb on + strand, within EX28DRAFT_0631 at 628.240 kb on + strand, within EX28DRAFT_0631 at 628.241 kb on - strand, within EX28DRAFT_0631 at 628.241 kb on - strand, within EX28DRAFT_0631 at 628.241 kb on - strand, within EX28DRAFT_0631 at 628.248 kb on - strand, within EX28DRAFT_0631 at 628.268 kb on - strand, within EX28DRAFT_0631 at 628.302 kb on - strand, within EX28DRAFT_0631 at 628.334 kb on + strand, within EX28DRAFT_0631 at 628.337 kb on + strand, within EX28DRAFT_0631 at 628.337 kb on + strand, within EX28DRAFT_0631 at 628.342 kb on + strand, within EX28DRAFT_0631 at 628.342 kb on + strand, within EX28DRAFT_0631 at 628.342 kb on + strand, within EX28DRAFT_0631 at 628.343 kb on - strand, within EX28DRAFT_0631 at 628.442 kb on + strand, within EX28DRAFT_0631 at 628.442 kb on + strand, within EX28DRAFT_0631 at 628.550 kb on + strand, within EX28DRAFT_0631 at 628.656 kb on - strand at 628.808 kb on + strand, within EX28DRAFT_0632 at 628.881 kb on + strand, within EX28DRAFT_0632 at 628.882 kb on - strand, within EX28DRAFT_0632 at 628.882 kb on - strand, within EX28DRAFT_0632 at 628.997 kb on + strand at 628.998 kb on - strand at 629.046 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.328 kb on - strand at 629.351 kb on + strand at 629.351 kb on + strand at 629.351 kb on + strand at 629.351 kb on + strand at 629.351 kb on + strand at 629.352 kb on - strand at 629.352 kb on - strand at 629.352 kb on - strand at 629.352 kb on - strand at 629.352 kb on - strand at 629.353 kb on + strand at 629.354 kb on - strand at 629.363 kb on + strand at 629.363 kb on + strand at 629.386 kb on - strand at 629.386 kb on - strand at 629.453 kb on + strand at 629.453 kb on + strand at 629.453 kb on + strand at 629.453 kb on + strand at 629.454 kb on - strand at 629.472 kb on + strand, within EX28DRAFT_0633 at 629.472 kb on + strand, within EX28DRAFT_0633 at 629.472 kb on + strand, within EX28DRAFT_0633 at 629.472 kb on + strand, within EX28DRAFT_0633 at 629.472 kb on + strand, within EX28DRAFT_0633 at 629.473 kb on - strand, within EX28DRAFT_0633 at 629.473 kb on - strand, within EX28DRAFT_0633 at 629.473 kb on - strand, within EX28DRAFT_0633 at 629.475 kb on + strand, within EX28DRAFT_0633 at 629.475 kb on + strand, within EX28DRAFT_0633 at 629.475 kb on + strand, within EX28DRAFT_0633 at 629.475 kb on + strand, within EX28DRAFT_0633 at 629.476 kb on - strand, within EX28DRAFT_0633 at 629.476 kb on - strand, within EX28DRAFT_0633 at 629.476 kb on - strand, within EX28DRAFT_0633 at 629.476 kb on - strand, within EX28DRAFT_0633 at 629.481 kb on + strand, within EX28DRAFT_0633 at 629.481 kb on + strand, within EX28DRAFT_0633 at 629.481 kb on + strand, within EX28DRAFT_0633 at 629.482 kb on - strand, within EX28DRAFT_0633 at 629.482 kb on - strand, within EX28DRAFT_0633 at 629.482 kb on - strand, within EX28DRAFT_0633 at 629.484 kb on + strand, within EX28DRAFT_0633 at 629.484 kb on + strand, within EX28DRAFT_0633 at 629.485 kb on - strand, within EX28DRAFT_0633 at 629.523 kb on - strand, within EX28DRAFT_0633 at 629.556 kb on - strand, within EX28DRAFT_0633 at 629.565 kb on + strand, within EX28DRAFT_0633 at 629.565 kb on + strand, within EX28DRAFT_0633 at 629.565 kb on + strand, within EX28DRAFT_0633 at 629.565 kb on + strand, within EX28DRAFT_0633 at 629.566 kb on - strand, within EX28DRAFT_0633 at 629.566 kb on - strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.571 kb on + strand, within EX28DRAFT_0633 at 629.572 kb on - strand, within EX28DRAFT_0633 at 629.572 kb on - strand, within EX28DRAFT_0633 at 629.572 kb on - strand, within EX28DRAFT_0633 at 629.572 kb on - strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.616 kb on + strand, within EX28DRAFT_0633 at 629.617 kb on - strand, within EX28DRAFT_0633 at 629.617 kb on - strand, within EX28DRAFT_0633 at 629.617 kb on - strand, within EX28DRAFT_0633 at 629.617 kb on - strand, within EX28DRAFT_0633 at 629.617 kb on - strand, within EX28DRAFT_0633 at 629.628 kb on + strand, within EX28DRAFT_0633 at 629.628 kb on + strand, within EX28DRAFT_0633 at 629.628 kb on + strand, within EX28DRAFT_0633 at 629.629 kb on - strand, within EX28DRAFT_0633 at 629.629 kb on - strand, within EX28DRAFT_0633 at 629.705 kb on - strand, within EX28DRAFT_0633 at 629.712 kb on + strand, within EX28DRAFT_0633 at 629.712 kb on + strand, within EX28DRAFT_0633 at 629.712 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.773 kb on + strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.774 kb on - strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.777 kb on + strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.778 kb on - strand, within EX28DRAFT_0633 at 629.874 kb on + strand, within EX28DRAFT_0633 at 629.874 kb on + strand, within EX28DRAFT_0633 at 629.874 kb on + strand, within EX28DRAFT_0633 at 629.875 kb on - strand, within EX28DRAFT_0633 at 629.875 kb on - strand, within EX28DRAFT_0633 at 629.875 kb on - strand, within EX28DRAFT_0633 at 629.875 kb on - strand, within EX28DRAFT_0633 at 629.875 kb on - strand, within EX28DRAFT_0633 at 629.875 kb on - strand, within EX28DRAFT_0633
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 627,732 + -3.8 627,806 - -1.7 627,815 - -3.3 627,869 + +0.4 627,870 - -0.5 627,870 - +1.3 627,870 - +0.3 627,870 - -1.8 627,875 - +1.0 627,876 + +0.9 627,885 + +0.9 627,886 - -0.1 627,888 + -1.6 627,889 - +0.7 627,896 - +0.4 627,896 - +1.1 627,896 - +0.6 627,917 - +1.4 627,919 + +1.0 627,920 - +1.3 627,920 - -2.6 627,920 - -2.1 627,920 - +0.3 627,923 + -3.8 627,924 - +0.8 627,924 - +0.4 627,924 - +0.6 628,000 + EX28DRAFT_0631 0.11 +1.1 628,000 + EX28DRAFT_0631 0.11 +1.6 628,000 + EX28DRAFT_0631 0.11 -2.2 628,000 + EX28DRAFT_0631 0.11 -0.3 628,001 - EX28DRAFT_0631 0.11 +0.2 628,013 - EX28DRAFT_0631 0.12 +0.8 628,013 - EX28DRAFT_0631 0.12 -0.1 628,079 + EX28DRAFT_0631 0.21 +0.7 628,088 + EX28DRAFT_0631 0.23 -1.1 628,110 + EX28DRAFT_0631 0.26 +1.7 628,110 + EX28DRAFT_0631 0.26 +0.5 628,134 + EX28DRAFT_0631 0.29 +1.2 628,240 + EX28DRAFT_0631 0.44 +1.3 628,241 - EX28DRAFT_0631 0.44 +0.9 628,241 - EX28DRAFT_0631 0.44 +0.0 628,241 - EX28DRAFT_0631 0.44 +0.5 628,248 - EX28DRAFT_0631 0.45 +0.6 628,268 - EX28DRAFT_0631 0.48 -2.7 628,302 - EX28DRAFT_0631 0.52 -0.5 628,334 + EX28DRAFT_0631 0.57 -0.0 628,337 + EX28DRAFT_0631 0.57 +0.7 628,337 + EX28DRAFT_0631 0.57 +1.0 628,342 + EX28DRAFT_0631 0.58 +1.5 628,342 + EX28DRAFT_0631 0.58 +2.1 628,342 + EX28DRAFT_0631 0.58 -4.6 628,343 - EX28DRAFT_0631 0.58 +1.2 628,442 + EX28DRAFT_0631 0.72 -3.3 628,442 + EX28DRAFT_0631 0.72 +0.3 628,550 + EX28DRAFT_0631 0.87 +0.2 628,656 - -5.7 628,808 + EX28DRAFT_0632 0.42 -1.5 628,881 + EX28DRAFT_0632 0.75 -0.6 628,882 - EX28DRAFT_0632 0.75 -0.0 628,882 - EX28DRAFT_0632 0.75 -0.1 628,997 + -2.0 628,998 - -1.3 629,046 - -2.4 629,328 - +2.6 629,328 - +0.7 629,328 - +0.6 629,328 - -1.9 629,328 - +1.7 629,351 + -0.1 629,351 + +1.2 629,351 + +0.9 629,351 + -0.0 629,351 + +1.3 629,352 - -2.9 629,352 - +1.0 629,352 - +0.3 629,352 - +2.0 629,352 - -0.6 629,353 + +0.6 629,354 - +1.1 629,363 + -0.4 629,363 + -0.3 629,386 - -4.2 629,386 - +0.5 629,453 + +1.2 629,453 + +0.1 629,453 + +1.5 629,453 + +0.5 629,454 - -0.5 629,472 + EX28DRAFT_0633 0.10 +0.8 629,472 + EX28DRAFT_0633 0.10 +0.8 629,472 + EX28DRAFT_0633 0.10 +1.3 629,472 + EX28DRAFT_0633 0.10 +1.0 629,472 + EX28DRAFT_0633 0.10 +0.7 629,473 - EX28DRAFT_0633 0.11 +0.3 629,473 - EX28DRAFT_0633 0.11 -1.3 629,473 - EX28DRAFT_0633 0.11 +0.1 629,475 + EX28DRAFT_0633 0.11 +1.0 629,475 + EX28DRAFT_0633 0.11 +1.2 629,475 + EX28DRAFT_0633 0.11 +0.8 629,475 + EX28DRAFT_0633 0.11 -2.2 629,476 - EX28DRAFT_0633 0.11 +0.4 629,476 - EX28DRAFT_0633 0.11 -3.5 629,476 - EX28DRAFT_0633 0.11 -0.9 629,476 - EX28DRAFT_0633 0.11 -0.9 629,481 + EX28DRAFT_0633 0.12 +2.2 629,481 + EX28DRAFT_0633 0.12 +1.0 629,481 + EX28DRAFT_0633 0.12 +1.4 629,482 - EX28DRAFT_0633 0.12 +0.9 629,482 - EX28DRAFT_0633 0.12 -0.2 629,482 - EX28DRAFT_0633 0.12 -1.7 629,484 + EX28DRAFT_0633 0.12 +1.5 629,484 + EX28DRAFT_0633 0.12 -0.0 629,485 - EX28DRAFT_0633 0.12 -0.5 629,523 - EX28DRAFT_0633 0.18 -4.1 629,556 - EX28DRAFT_0633 0.23 -1.5 629,565 + EX28DRAFT_0633 0.25 +1.7 629,565 + EX28DRAFT_0633 0.25 +0.0 629,565 + EX28DRAFT_0633 0.25 +1.3 629,565 + EX28DRAFT_0633 0.25 +0.2 629,566 - EX28DRAFT_0633 0.25 -0.4 629,566 - EX28DRAFT_0633 0.25 -3.9 629,571 + EX28DRAFT_0633 0.25 +1.5 629,571 + EX28DRAFT_0633 0.25 +0.6 629,571 + EX28DRAFT_0633 0.25 +1.8 629,571 + EX28DRAFT_0633 0.25 +0.6 629,571 + EX28DRAFT_0633 0.25 +0.7 629,571 + EX28DRAFT_0633 0.25 +0.4 629,571 + EX28DRAFT_0633 0.25 +0.2 629,571 + EX28DRAFT_0633 0.25 +1.4 629,571 + EX28DRAFT_0633 0.25 +1.7 629,572 - EX28DRAFT_0633 0.26 -4.1 629,572 - EX28DRAFT_0633 0.26 +1.9 629,572 - EX28DRAFT_0633 0.26 -0.9 629,572 - EX28DRAFT_0633 0.26 -2.1 629,616 + EX28DRAFT_0633 0.32 +2.1 629,616 + EX28DRAFT_0633 0.32 -3.7 629,616 + EX28DRAFT_0633 0.32 +1.6 629,616 + EX28DRAFT_0633 0.32 +1.8 629,616 + EX28DRAFT_0633 0.32 +1.1 629,616 + EX28DRAFT_0633 0.32 +1.4 629,616 + EX28DRAFT_0633 0.32 +0.7 629,616 + EX28DRAFT_0633 0.32 +0.8 629,617 - EX28DRAFT_0633 0.32 -1.1 629,617 - EX28DRAFT_0633 0.32 -3.0 629,617 - EX28DRAFT_0633 0.32 +1.0 629,617 - EX28DRAFT_0633 0.32 +0.1 629,617 - EX28DRAFT_0633 0.32 +0.7 629,628 + EX28DRAFT_0633 0.34 +1.4 629,628 + EX28DRAFT_0633 0.34 +1.3 629,628 + EX28DRAFT_0633 0.34 +0.6 629,629 - EX28DRAFT_0633 0.34 +0.7 629,629 - EX28DRAFT_0633 0.34 +0.6 629,705 - EX28DRAFT_0633 0.46 +0.6 629,712 + EX28DRAFT_0633 0.47 +1.2 629,712 + EX28DRAFT_0633 0.47 -0.0 629,712 + EX28DRAFT_0633 0.47 +1.2 629,773 + EX28DRAFT_0633 0.56 +1.3 629,773 + EX28DRAFT_0633 0.56 +1.1 629,773 + EX28DRAFT_0633 0.56 -1.2 629,773 + EX28DRAFT_0633 0.56 +2.3 629,773 + EX28DRAFT_0633 0.56 -2.1 629,773 + EX28DRAFT_0633 0.56 +0.9 629,773 + EX28DRAFT_0633 0.56 +0.3 629,773 + EX28DRAFT_0633 0.56 +0.6 629,773 + EX28DRAFT_0633 0.56 +0.8 629,773 + EX28DRAFT_0633 0.56 +1.6 629,773 + EX28DRAFT_0633 0.56 +1.2 629,773 + EX28DRAFT_0633 0.56 +0.8 629,774 - EX28DRAFT_0633 0.56 -3.0 629,774 - EX28DRAFT_0633 0.56 +0.4 629,774 - EX28DRAFT_0633 0.56 +2.6 629,774 - EX28DRAFT_0633 0.56 -1.3 629,774 - EX28DRAFT_0633 0.56 +1.1 629,774 - EX28DRAFT_0633 0.56 -0.7 629,774 - EX28DRAFT_0633 0.56 +1.3 629,774 - EX28DRAFT_0633 0.56 -1.0 629,774 - EX28DRAFT_0633 0.56 +0.8 629,774 - EX28DRAFT_0633 0.56 +1.1 629,774 - EX28DRAFT_0633 0.56 -0.2 629,777 + EX28DRAFT_0633 0.57 +1.2 629,777 + EX28DRAFT_0633 0.57 +1.2 629,777 + EX28DRAFT_0633 0.57 +4.1 629,777 + EX28DRAFT_0633 0.57 +1.7 629,777 + EX28DRAFT_0633 0.57 +1.4 629,777 + EX28DRAFT_0633 0.57 +1.1 629,777 + EX28DRAFT_0633 0.57 +1.6 629,777 + EX28DRAFT_0633 0.57 +2.1 629,777 + EX28DRAFT_0633 0.57 +2.8 629,777 + EX28DRAFT_0633 0.57 +3.1 629,777 + EX28DRAFT_0633 0.57 +0.6 629,778 - EX28DRAFT_0633 0.57 +0.1 629,778 - EX28DRAFT_0633 0.57 -1.5 629,778 - EX28DRAFT_0633 0.57 +0.4 629,778 - EX28DRAFT_0633 0.57 -1.0 629,778 - EX28DRAFT_0633 0.57 +0.9 629,778 - EX28DRAFT_0633 0.57 -0.3 629,778 - EX28DRAFT_0633 0.57 +0.6 629,778 - EX28DRAFT_0633 0.57 +1.2 629,778 - EX28DRAFT_0633 0.57 +1.5 629,778 - EX28DRAFT_0633 0.57 +0.7 629,778 - EX28DRAFT_0633 0.57 +1.0 629,874 + EX28DRAFT_0633 0.72 +1.3 629,874 + EX28DRAFT_0633 0.72 +1.1 629,874 + EX28DRAFT_0633 0.72 +0.8 629,875 - EX28DRAFT_0633 0.72 +2.3 629,875 - EX28DRAFT_0633 0.72 +0.1 629,875 - EX28DRAFT_0633 0.72 -0.5 629,875 - EX28DRAFT_0633 0.72 +2.5 629,875 - EX28DRAFT_0633 0.72 -3.3 629,875 - EX28DRAFT_0633 0.72 -1.5
Or see this region's nucleotide sequence