Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0573 and EX28DRAFT_0574 overlap by 4 nucleotides EX28DRAFT_0574 and EX28DRAFT_0575 overlap by 4 nucleotides EX28DRAFT_0575 and EX28DRAFT_0576 overlap by 1 nucleotides
EX28DRAFT_0573: EX28DRAFT_0573 - Lysine/ornithine N-monooxygenase, at 569,894 to 571,219
_0573
EX28DRAFT_0574: EX28DRAFT_0574 - Siderophore synthetase component, at 571,216 to 572,958
_0574
EX28DRAFT_0575: EX28DRAFT_0575 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 572,955 to 573,902
_0575
EX28DRAFT_0576: EX28DRAFT_0576 - Siderophore synthetase component, at 573,902 to 575,644
_0576
Position (kb) 571
572
573 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 570.397 kb on - strand, within EX28DRAFT_0573 at 570.528 kb on + strand, within EX28DRAFT_0573 at 570.564 kb on + strand, within EX28DRAFT_0573 at 570.568 kb on + strand, within EX28DRAFT_0573 at 570.626 kb on - strand, within EX28DRAFT_0573 at 570.731 kb on - strand, within EX28DRAFT_0573 at 570.845 kb on - strand, within EX28DRAFT_0573 at 570.918 kb on + strand, within EX28DRAFT_0573 at 570.919 kb on - strand, within EX28DRAFT_0573 at 570.996 kb on + strand, within EX28DRAFT_0573 at 571.136 kb on - strand at 571.209 kb on + strand at 571.271 kb on + strand at 571.272 kb on - strand at 571.272 kb on - strand at 571.407 kb on + strand, within EX28DRAFT_0574 at 571.407 kb on + strand, within EX28DRAFT_0574 at 571.408 kb on - strand, within EX28DRAFT_0574 at 571.408 kb on - strand, within EX28DRAFT_0574 at 571.409 kb on + strand, within EX28DRAFT_0574 at 571.410 kb on - strand, within EX28DRAFT_0574 at 571.410 kb on - strand, within EX28DRAFT_0574 at 571.410 kb on - strand, within EX28DRAFT_0574 at 571.536 kb on - strand, within EX28DRAFT_0574 at 571.734 kb on - strand, within EX28DRAFT_0574 at 571.886 kb on + strand, within EX28DRAFT_0574 at 572.124 kb on - strand, within EX28DRAFT_0574 at 572.124 kb on - strand, within EX28DRAFT_0574 at 572.124 kb on - strand, within EX28DRAFT_0574 at 572.127 kb on + strand, within EX28DRAFT_0574 at 572.127 kb on + strand, within EX28DRAFT_0574 at 572.127 kb on + strand, within EX28DRAFT_0574 at 572.151 kb on - strand, within EX28DRAFT_0574 at 572.205 kb on - strand, within EX28DRAFT_0574 at 572.572 kb on + strand, within EX28DRAFT_0574 at 572.629 kb on + strand, within EX28DRAFT_0574 at 572.660 kb on + strand, within EX28DRAFT_0574 at 573.133 kb on + strand, within EX28DRAFT_0575 at 573.172 kb on + strand, within EX28DRAFT_0575 at 573.287 kb on - strand, within EX28DRAFT_0575 at 573.332 kb on - strand, within EX28DRAFT_0575 at 573.332 kb on - strand, within EX28DRAFT_0575 at 573.359 kb on - strand, within EX28DRAFT_0575 at 573.500 kb on - strand, within EX28DRAFT_0575 at 573.646 kb on + strand, within EX28DRAFT_0575 at 573.717 kb on - strand, within EX28DRAFT_0575 at 573.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 570,397 - EX28DRAFT_0573 0.38 +1.0 570,528 + EX28DRAFT_0573 0.48 +0.8 570,564 + EX28DRAFT_0573 0.51 -1.5 570,568 + EX28DRAFT_0573 0.51 +3.9 570,626 - EX28DRAFT_0573 0.55 +0.3 570,731 - EX28DRAFT_0573 0.63 -0.7 570,845 - EX28DRAFT_0573 0.72 -3.2 570,918 + EX28DRAFT_0573 0.77 -0.9 570,919 - EX28DRAFT_0573 0.77 -4.2 570,996 + EX28DRAFT_0573 0.83 -1.1 571,136 - -1.2 571,209 + +0.5 571,271 + +0.1 571,272 - -1.3 571,272 - +0.7 571,407 + EX28DRAFT_0574 0.11 -0.5 571,407 + EX28DRAFT_0574 0.11 -2.2 571,408 - EX28DRAFT_0574 0.11 -0.4 571,408 - EX28DRAFT_0574 0.11 -0.3 571,409 + EX28DRAFT_0574 0.11 +1.9 571,410 - EX28DRAFT_0574 0.11 -0.4 571,410 - EX28DRAFT_0574 0.11 -2.0 571,410 - EX28DRAFT_0574 0.11 -0.8 571,536 - EX28DRAFT_0574 0.18 +0.8 571,734 - EX28DRAFT_0574 0.30 -4.7 571,886 + EX28DRAFT_0574 0.38 +1.4 572,124 - EX28DRAFT_0574 0.52 +0.6 572,124 - EX28DRAFT_0574 0.52 -1.3 572,124 - EX28DRAFT_0574 0.52 +2.1 572,127 + EX28DRAFT_0574 0.52 +0.9 572,127 + EX28DRAFT_0574 0.52 +0.1 572,127 + EX28DRAFT_0574 0.52 -3.2 572,151 - EX28DRAFT_0574 0.54 -0.1 572,205 - EX28DRAFT_0574 0.57 +0.8 572,572 + EX28DRAFT_0574 0.78 -0.1 572,629 + EX28DRAFT_0574 0.81 +0.8 572,660 + EX28DRAFT_0574 0.83 +0.3 573,133 + EX28DRAFT_0575 0.19 +0.3 573,172 + EX28DRAFT_0575 0.23 -0.4 573,287 - EX28DRAFT_0575 0.35 +1.1 573,332 - EX28DRAFT_0575 0.40 +0.3 573,332 - EX28DRAFT_0575 0.40 -0.2 573,359 - EX28DRAFT_0575 0.43 +0.2 573,500 - EX28DRAFT_0575 0.57 -0.8 573,646 + EX28DRAFT_0575 0.73 +0.1 573,717 - EX28DRAFT_0575 0.80 +0.4 573,943 - +0.6
Or see this region's nucleotide sequence