Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0498 and EX28DRAFT_0499 overlap by 26 nucleotides EX28DRAFT_0499 and EX28DRAFT_0500 are separated by 16 nucleotides EX28DRAFT_0500 and EX28DRAFT_0501 are separated by 15 nucleotides
EX28DRAFT_0498: EX28DRAFT_0498 - colanic acid biosynthesis glycosyl transferase WcaC, at 489,702 to 490,919
_0498
EX28DRAFT_0499: EX28DRAFT_0499 - putative colanic acid polymerase WcaD, at 490,894 to 492,114
_0499
EX28DRAFT_0500: EX28DRAFT_0500 - colanic acid biosynthesis glycosyl transferase WcaE, at 492,131 to 492,877
_0500
EX28DRAFT_0501: EX28DRAFT_0501 - colanic acid biosynthesis acetyltransferase WcaF, at 492,893 to 493,441
_0501
Position (kb) 490
491
492
493 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.136 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.284 kb on - strand, within EX28DRAFT_0498 at 490.284 kb on - strand, within EX28DRAFT_0498 at 490.349 kb on + strand, within EX28DRAFT_0498 at 490.369 kb on + strand, within EX28DRAFT_0498 at 490.652 kb on + strand, within EX28DRAFT_0498 at 490.893 kb on + strand at 490.893 kb on + strand at 490.894 kb on - strand at 490.921 kb on + strand at 490.922 kb on - strand at 490.942 kb on + strand at 490.943 kb on - strand at 490.943 kb on - strand at 491.029 kb on + strand, within EX28DRAFT_0499 at 491.029 kb on + strand, within EX28DRAFT_0499 at 491.101 kb on + strand, within EX28DRAFT_0499 at 491.102 kb on - strand, within EX28DRAFT_0499 at 491.272 kb on - strand, within EX28DRAFT_0499 at 491.790 kb on - strand, within EX28DRAFT_0499 at 491.790 kb on - strand, within EX28DRAFT_0499 at 491.815 kb on + strand, within EX28DRAFT_0499 at 492.103 kb on - strand at 492.103 kb on - strand at 492.130 kb on + strand at 492.181 kb on - strand at 492.332 kb on - strand, within EX28DRAFT_0500 at 492.332 kb on - strand, within EX28DRAFT_0500 at 492.341 kb on + strand, within EX28DRAFT_0500 at 492.342 kb on - strand, within EX28DRAFT_0500 at 492.342 kb on - strand, within EX28DRAFT_0500 at 492.473 kb on + strand, within EX28DRAFT_0500 at 492.474 kb on - strand, within EX28DRAFT_0500 at 492.474 kb on - strand, within EX28DRAFT_0500 at 492.542 kb on + strand, within EX28DRAFT_0500 at 492.543 kb on - strand, within EX28DRAFT_0500 at 492.544 kb on + strand, within EX28DRAFT_0500 at 492.549 kb on - strand, within EX28DRAFT_0500 at 492.629 kb on - strand, within EX28DRAFT_0500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 490,017 + EX28DRAFT_0498 0.26 -1.1 490,017 + EX28DRAFT_0498 0.26 -1.2 490,018 - EX28DRAFT_0498 0.26 -3.3 490,018 - EX28DRAFT_0498 0.26 -3.0 490,136 + EX28DRAFT_0498 0.36 +1.1 490,163 + EX28DRAFT_0498 0.38 -1.1 490,163 + EX28DRAFT_0498 0.38 +0.0 490,284 - EX28DRAFT_0498 0.48 -2.8 490,284 - EX28DRAFT_0498 0.48 -4.3 490,349 + EX28DRAFT_0498 0.53 +0.4 490,369 + EX28DRAFT_0498 0.55 -0.7 490,652 + EX28DRAFT_0498 0.78 -1.2 490,893 + -3.1 490,893 + -0.3 490,894 - +0.3 490,921 + +0.4 490,922 - -3.5 490,942 + -0.9 490,943 - +2.0 490,943 - +1.9 491,029 + EX28DRAFT_0499 0.11 +1.2 491,029 + EX28DRAFT_0499 0.11 -2.0 491,101 + EX28DRAFT_0499 0.17 -0.2 491,102 - EX28DRAFT_0499 0.17 -0.8 491,272 - EX28DRAFT_0499 0.31 -0.2 491,790 - EX28DRAFT_0499 0.73 -0.9 491,790 - EX28DRAFT_0499 0.73 -0.4 491,815 + EX28DRAFT_0499 0.75 +1.5 492,103 - +0.8 492,103 - -2.3 492,130 + +0.4 492,181 - -3.5 492,332 - EX28DRAFT_0500 0.27 -0.0 492,332 - EX28DRAFT_0500 0.27 -0.2 492,341 + EX28DRAFT_0500 0.28 +0.5 492,342 - EX28DRAFT_0500 0.28 -2.9 492,342 - EX28DRAFT_0500 0.28 -0.7 492,473 + EX28DRAFT_0500 0.46 +0.3 492,474 - EX28DRAFT_0500 0.46 -2.8 492,474 - EX28DRAFT_0500 0.46 -3.3 492,542 + EX28DRAFT_0500 0.55 -1.0 492,543 - EX28DRAFT_0500 0.55 -0.0 492,544 + EX28DRAFT_0500 0.55 -2.6 492,549 - EX28DRAFT_0500 0.56 -1.8 492,629 - EX28DRAFT_0500 0.67 +0.4
Or see this region's nucleotide sequence