Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0482

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0481 and EX28DRAFT_0482 are separated by 0 nucleotidesEX28DRAFT_0482 and EX28DRAFT_0483 are separated by 0 nucleotides EX28DRAFT_0481: EX28DRAFT_0481 - Arabinose efflux permease, at 463,924 to 465,339 _0481 EX28DRAFT_0482: EX28DRAFT_0482 - Cation/multidrug efflux pump, at 465,340 to 468,417 _0482 EX28DRAFT_0483: EX28DRAFT_0483 - Cation/multidrug efflux pump, at 468,418 to 471,540 _0483 Position (kb) 465 466 467 468 469Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 464.552 kb on + strand, within EX28DRAFT_0481at 464.618 kb on + strand, within EX28DRAFT_0481at 464.709 kb on + strand, within EX28DRAFT_0481at 464.776 kb on - strand, within EX28DRAFT_0481at 464.777 kb on + strand, within EX28DRAFT_0481at 464.778 kb on - strand, within EX28DRAFT_0481at 464.862 kb on - strand, within EX28DRAFT_0481at 464.943 kb on + strand, within EX28DRAFT_0481at 464.944 kb on - strand, within EX28DRAFT_0481at 464.945 kb on + strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 465.111 kb on + strand, within EX28DRAFT_0481at 465.180 kb on - strand, within EX28DRAFT_0481at 465.180 kb on - strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.196 kb on - strand, within EX28DRAFT_0481at 465.201 kb on + strandat 465.202 kb on - strandat 465.202 kb on - strandat 465.304 kb on + strandat 465.305 kb on - strandat 465.342 kb on - strandat 465.404 kb on + strandat 465.404 kb on + strandat 465.405 kb on - strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.682 kb on + strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.797 kb on + strand, within EX28DRAFT_0482at 465.807 kb on - strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.999 kb on + strand, within EX28DRAFT_0482at 466.079 kb on + strand, within EX28DRAFT_0482at 466.181 kb on + strand, within EX28DRAFT_0482at 466.199 kb on + strand, within EX28DRAFT_0482at 466.200 kb on - strand, within EX28DRAFT_0482at 466.295 kb on + strand, within EX28DRAFT_0482at 466.296 kb on - strand, within EX28DRAFT_0482at 466.430 kb on + strand, within EX28DRAFT_0482at 466.431 kb on - strand, within EX28DRAFT_0482at 466.436 kb on + strand, within EX28DRAFT_0482at 466.587 kb on + strand, within EX28DRAFT_0482at 466.588 kb on - strand, within EX28DRAFT_0482at 466.672 kb on - strand, within EX28DRAFT_0482at 466.672 kb on - strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.787 kb on + strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 466.788 kb on - strand, within EX28DRAFT_0482at 467.119 kb on - strand, within EX28DRAFT_0482at 467.285 kb on + strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.286 kb on - strand, within EX28DRAFT_0482at 467.538 kb on + strand, within EX28DRAFT_0482at 467.587 kb on - strand, within EX28DRAFT_0482at 467.676 kb on - strand, within EX28DRAFT_0482at 467.683 kb on - strand, within EX28DRAFT_0482at 467.941 kb on - strand, within EX28DRAFT_0482at 467.972 kb on + strand, within EX28DRAFT_0482at 467.973 kb on - strand, within EX28DRAFT_0482at 467.973 kb on - strand, within EX28DRAFT_0482at 467.976 kb on + strand, within EX28DRAFT_0482at 468.354 kb on + strandat 468.392 kb on + strandat 468.419 kb on + strandat 468.419 kb on + strandat 468.419 kb on + strandat 468.420 kb on - strandat 468.485 kb on + strandat 468.485 kb on + strandat 468.486 kb on - strandat 468.486 kb on - strandat 468.486 kb on - strandat 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.908 kb on + strand, within EX28DRAFT_0483at 468.909 kb on - strand, within EX28DRAFT_0483at 468.909 kb on - strand, within EX28DRAFT_0483at 468.909 kb on - strand, within EX28DRAFT_0483at 469.065 kb on - strand, within EX28DRAFT_0483at 469.136 kb on + strand, within EX28DRAFT_0483at 469.281 kb on - strand, within EX28DRAFT_0483at 469.281 kb on - strand, within EX28DRAFT_0483at 469.316 kb on + strand, within EX28DRAFT_0483at 469.385 kb on + strand, within EX28DRAFT_0483

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
remove
464,552 + EX28DRAFT_0481 0.44 -0.9
464,618 + EX28DRAFT_0481 0.49 -1.4
464,709 + EX28DRAFT_0481 0.55 -1.3
464,776 - EX28DRAFT_0481 0.60 -1.4
464,777 + EX28DRAFT_0481 0.60 +1.4
464,778 - EX28DRAFT_0481 0.60 -0.7
464,862 - EX28DRAFT_0481 0.66 +0.5
464,943 + EX28DRAFT_0481 0.72 -2.8
464,944 - EX28DRAFT_0481 0.72 -4.7
464,945 + EX28DRAFT_0481 0.72 -0.2
464,946 - EX28DRAFT_0481 0.72 -0.3
464,946 - EX28DRAFT_0481 0.72 -1.2
464,946 - EX28DRAFT_0481 0.72 -0.1
465,111 + EX28DRAFT_0481 0.84 +1.5
465,180 - EX28DRAFT_0481 0.89 +0.6
465,180 - EX28DRAFT_0481 0.89 +0.2
465,195 + EX28DRAFT_0481 0.90 +0.0
465,195 + EX28DRAFT_0481 0.90 +0.7
465,195 + EX28DRAFT_0481 0.90 +1.1
465,195 + EX28DRAFT_0481 0.90 -0.3
465,195 + EX28DRAFT_0481 0.90 +0.5
465,196 - EX28DRAFT_0481 0.90 -0.1
465,201 + -3.1
465,202 - +0.5
465,202 - +0.3
465,304 + -2.3
465,305 - -0.8
465,342 - -2.9
465,404 + +1.1
465,404 + +1.5
465,405 - +0.3
465,422 + -2.9
465,422 + -0.7
465,422 + +1.0
465,682 + EX28DRAFT_0482 0.11 -2.2
465,683 - EX28DRAFT_0482 0.11 +0.3
465,683 - EX28DRAFT_0482 0.11 +1.3
465,683 - EX28DRAFT_0482 0.11 +1.2
465,683 - EX28DRAFT_0482 0.11 +0.3
465,688 - EX28DRAFT_0482 0.11 -3.3
465,688 - EX28DRAFT_0482 0.11 +0.2
465,688 - EX28DRAFT_0482 0.11 +0.2
465,688 - EX28DRAFT_0482 0.11 -1.5
465,797 + EX28DRAFT_0482 0.15 +0.4
465,807 - EX28DRAFT_0482 0.15 +0.6
465,825 + EX28DRAFT_0482 0.16 -1.7
465,825 + EX28DRAFT_0482 0.16 -0.2
465,825 + EX28DRAFT_0482 0.16 -0.1
465,826 - EX28DRAFT_0482 0.16 -0.4
465,826 - EX28DRAFT_0482 0.16 +0.5
465,826 - EX28DRAFT_0482 0.16 -0.9
465,828 - EX28DRAFT_0482 0.16 -2.1
465,828 - EX28DRAFT_0482 0.16 +0.1
465,828 - EX28DRAFT_0482 0.16 +0.5
465,999 + EX28DRAFT_0482 0.21 +0.2
466,079 + EX28DRAFT_0482 0.24 -1.1
466,181 + EX28DRAFT_0482 0.27 +0.5
466,199 + EX28DRAFT_0482 0.28 +0.8
466,200 - EX28DRAFT_0482 0.28 -1.4
466,295 + EX28DRAFT_0482 0.31 +1.1
466,296 - EX28DRAFT_0482 0.31 -1.4
466,430 + EX28DRAFT_0482 0.35 -1.5
466,431 - EX28DRAFT_0482 0.35 +1.3
466,436 + EX28DRAFT_0482 0.36 -0.9
466,587 + EX28DRAFT_0482 0.41 -3.1
466,588 - EX28DRAFT_0482 0.41 -2.4
466,672 - EX28DRAFT_0482 0.43 -1.4
466,672 - EX28DRAFT_0482 0.43 +0.9
466,787 + EX28DRAFT_0482 0.47 -1.3
466,787 + EX28DRAFT_0482 0.47 +0.5
466,787 + EX28DRAFT_0482 0.47 +1.8
466,787 + EX28DRAFT_0482 0.47 -2.5
466,788 - EX28DRAFT_0482 0.47 -1.3
466,788 - EX28DRAFT_0482 0.47 -2.7
466,788 - EX28DRAFT_0482 0.47 -1.7
466,788 - EX28DRAFT_0482 0.47 -2.7
467,119 - EX28DRAFT_0482 0.58 -0.2
467,285 + EX28DRAFT_0482 0.63 +2.1
467,286 - EX28DRAFT_0482 0.63 +1.1
467,286 - EX28DRAFT_0482 0.63 -1.9
467,286 - EX28DRAFT_0482 0.63 -0.4
467,286 - EX28DRAFT_0482 0.63 +0.1
467,538 + EX28DRAFT_0482 0.71 -0.4
467,587 - EX28DRAFT_0482 0.73 -0.2
467,676 - EX28DRAFT_0482 0.76 +1.4
467,683 - EX28DRAFT_0482 0.76 -1.0
467,941 - EX28DRAFT_0482 0.85 -3.5
467,972 + EX28DRAFT_0482 0.86 -0.4
467,973 - EX28DRAFT_0482 0.86 -2.0
467,973 - EX28DRAFT_0482 0.86 +2.1
467,976 + EX28DRAFT_0482 0.86 -0.4
468,354 + +0.0
468,392 + -0.7
468,419 + -0.3
468,419 + +1.1
468,419 + -0.4
468,420 - +0.0
468,485 + +0.1
468,485 + +1.1
468,486 - -1.9
468,486 - -4.2
468,486 - -4.1
468,908 + EX28DRAFT_0483 0.16 -0.7
468,908 + EX28DRAFT_0483 0.16 -2.1
468,908 + EX28DRAFT_0483 0.16 +0.5
468,908 + EX28DRAFT_0483 0.16 +1.4
468,908 + EX28DRAFT_0483 0.16 -1.0
468,909 - EX28DRAFT_0483 0.16 -1.2
468,909 - EX28DRAFT_0483 0.16 -2.7
468,909 - EX28DRAFT_0483 0.16 -1.9
469,065 - EX28DRAFT_0483 0.21 -0.3
469,136 + EX28DRAFT_0483 0.23 +1.4
469,281 - EX28DRAFT_0483 0.28 -0.7
469,281 - EX28DRAFT_0483 0.28 -1.2
469,316 + EX28DRAFT_0483 0.29 -0.9
469,385 + EX28DRAFT_0483 0.31 -0.3

Or see this region's nucleotide sequence