Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0249 and EX28DRAFT_0250 are separated by 16 nucleotides EX28DRAFT_0250 and EX28DRAFT_0251 are separated by 45 nucleotides
EX28DRAFT_0249: EX28DRAFT_0249 - Rhs element Vgr protein, at 205,663 to 208,035
_0249
EX28DRAFT_0250: EX28DRAFT_0250 - PAAR motif, at 208,052 to 208,318
_0250
EX28DRAFT_0251: EX28DRAFT_0251 - hypothetical protein, at 208,364 to 211,159
_0251
Position (kb) 208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 207.065 kb on - strand, within EX28DRAFT_0249 at 207.122 kb on - strand, within EX28DRAFT_0249 at 207.193 kb on - strand, within EX28DRAFT_0249 at 207.211 kb on + strand, within EX28DRAFT_0249 at 207.334 kb on - strand, within EX28DRAFT_0249 at 207.579 kb on - strand, within EX28DRAFT_0249 at 207.630 kb on + strand, within EX28DRAFT_0249 at 207.633 kb on + strand, within EX28DRAFT_0249 at 207.710 kb on - strand, within EX28DRAFT_0249 at 207.710 kb on - strand, within EX28DRAFT_0249 at 207.810 kb on + strand at 207.820 kb on - strand at 207.855 kb on + strand at 207.916 kb on - strand at 208.020 kb on - strand at 208.030 kb on - strand at 208.033 kb on + strand at 208.036 kb on + strand at 208.159 kb on + strand, within EX28DRAFT_0250 at 208.234 kb on - strand, within EX28DRAFT_0250 at 208.234 kb on - strand, within EX28DRAFT_0250 at 208.283 kb on - strand, within EX28DRAFT_0250 at 208.343 kb on + strand at 208.363 kb on + strand at 208.380 kb on + strand at 208.381 kb on - strand at 208.418 kb on + strand at 208.442 kb on - strand at 208.444 kb on + strand at 208.445 kb on - strand at 208.511 kb on + strand at 208.538 kb on + strand at 208.545 kb on - strand at 208.592 kb on + strand at 208.684 kb on + strand, within EX28DRAFT_0251 at 208.684 kb on + strand, within EX28DRAFT_0251 at 208.684 kb on + strand, within EX28DRAFT_0251 at 208.726 kb on + strand, within EX28DRAFT_0251 at 208.835 kb on - strand, within EX28DRAFT_0251 at 208.837 kb on - strand, within EX28DRAFT_0251 at 209.184 kb on + strand, within EX28DRAFT_0251
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 207,065 - EX28DRAFT_0249 0.59 -0.2 207,122 - EX28DRAFT_0249 0.61 +1.6 207,193 - EX28DRAFT_0249 0.64 +1.3 207,211 + EX28DRAFT_0249 0.65 +0.3 207,334 - EX28DRAFT_0249 0.70 +4.5 207,579 - EX28DRAFT_0249 0.81 +1.6 207,630 + EX28DRAFT_0249 0.83 +0.1 207,633 + EX28DRAFT_0249 0.83 -0.3 207,710 - EX28DRAFT_0249 0.86 +0.4 207,710 - EX28DRAFT_0249 0.86 -0.7 207,810 + -0.0 207,820 - -1.3 207,855 + +1.4 207,916 - -0.5 208,020 - +2.3 208,030 - -1.0 208,033 + -1.3 208,036 + -1.4 208,159 + EX28DRAFT_0250 0.40 -1.6 208,234 - EX28DRAFT_0250 0.68 -2.3 208,234 - EX28DRAFT_0250 0.68 -0.4 208,283 - EX28DRAFT_0250 0.87 -3.8 208,343 + -3.3 208,363 + +0.8 208,380 + +0.4 208,381 - -2.3 208,418 + +0.3 208,442 - -0.8 208,444 + +0.9 208,445 - -0.5 208,511 + +1.3 208,538 + +0.1 208,545 - +0.4 208,592 + +0.9 208,684 + EX28DRAFT_0251 0.11 -1.0 208,684 + EX28DRAFT_0251 0.11 -0.2 208,684 + EX28DRAFT_0251 0.11 -2.2 208,726 + EX28DRAFT_0251 0.13 +1.8 208,835 - EX28DRAFT_0251 0.17 -1.5 208,837 - EX28DRAFT_0251 0.17 +0.9 209,184 + EX28DRAFT_0251 0.29 +1.0
Or see this region's nucleotide sequence