Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0249

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0248 and EX28DRAFT_0249 overlap by 4 nucleotidesEX28DRAFT_0249 and EX28DRAFT_0250 are separated by 16 nucleotidesEX28DRAFT_0250 and EX28DRAFT_0251 are separated by 45 nucleotides EX28DRAFT_0248: EX28DRAFT_0248 - type VI secretion ATPase, ClpV1 family, at 203,012 to 205,666 _0248 EX28DRAFT_0249: EX28DRAFT_0249 - Rhs element Vgr protein, at 205,663 to 208,035 _0249 EX28DRAFT_0250: EX28DRAFT_0250 - PAAR motif, at 208,052 to 208,318 _0250 EX28DRAFT_0251: EX28DRAFT_0251 - hypothetical protein, at 208,364 to 211,159 _0251 Position (kb) 205 206 207 208 209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 204.917 kb on + strand, within EX28DRAFT_0248at 204.917 kb on + strand, within EX28DRAFT_0248at 204.940 kb on + strand, within EX28DRAFT_0248at 204.960 kb on - strand, within EX28DRAFT_0248at 205.007 kb on + strand, within EX28DRAFT_0248at 205.121 kb on + strand, within EX28DRAFT_0248at 205.269 kb on + strand, within EX28DRAFT_0248at 205.514 kb on - strandat 205.558 kb on - strandat 205.558 kb on - strandat 205.604 kb on - strandat 205.648 kb on - strandat 205.682 kb on + strandat 206.035 kb on + strand, within EX28DRAFT_0249at 206.035 kb on + strand, within EX28DRAFT_0249at 206.036 kb on - strand, within EX28DRAFT_0249at 206.036 kb on - strand, within EX28DRAFT_0249at 206.124 kb on - strand, within EX28DRAFT_0249at 206.158 kb on + strand, within EX28DRAFT_0249at 206.159 kb on - strand, within EX28DRAFT_0249at 206.245 kb on - strand, within EX28DRAFT_0249at 206.263 kb on + strand, within EX28DRAFT_0249at 206.404 kb on + strand, within EX28DRAFT_0249at 206.404 kb on + strand, within EX28DRAFT_0249at 206.410 kb on + strand, within EX28DRAFT_0249at 206.411 kb on - strand, within EX28DRAFT_0249at 206.411 kb on - strand, within EX28DRAFT_0249at 206.431 kb on - strand, within EX28DRAFT_0249at 206.436 kb on + strand, within EX28DRAFT_0249at 206.437 kb on - strand, within EX28DRAFT_0249at 206.473 kb on + strand, within EX28DRAFT_0249at 206.491 kb on + strand, within EX28DRAFT_0249at 206.503 kb on + strand, within EX28DRAFT_0249at 206.504 kb on - strand, within EX28DRAFT_0249at 206.504 kb on - strand, within EX28DRAFT_0249at 206.504 kb on - strand, within EX28DRAFT_0249at 206.525 kb on - strand, within EX28DRAFT_0249at 206.870 kb on - strand, within EX28DRAFT_0249at 207.065 kb on - strand, within EX28DRAFT_0249at 207.122 kb on - strand, within EX28DRAFT_0249at 207.193 kb on - strand, within EX28DRAFT_0249at 207.211 kb on + strand, within EX28DRAFT_0249at 207.334 kb on - strand, within EX28DRAFT_0249at 207.579 kb on - strand, within EX28DRAFT_0249at 207.630 kb on + strand, within EX28DRAFT_0249at 207.633 kb on + strand, within EX28DRAFT_0249at 207.710 kb on - strand, within EX28DRAFT_0249at 207.710 kb on - strand, within EX28DRAFT_0249at 207.810 kb on + strandat 207.820 kb on - strandat 207.855 kb on + strandat 207.916 kb on - strandat 208.020 kb on - strandat 208.030 kb on - strandat 208.033 kb on + strandat 208.036 kb on + strandat 208.159 kb on + strand, within EX28DRAFT_0250at 208.234 kb on - strand, within EX28DRAFT_0250at 208.234 kb on - strand, within EX28DRAFT_0250at 208.283 kb on - strand, within EX28DRAFT_0250at 208.343 kb on + strandat 208.363 kb on + strandat 208.380 kb on + strandat 208.381 kb on - strandat 208.418 kb on + strandat 208.442 kb on - strandat 208.444 kb on + strandat 208.445 kb on - strandat 208.511 kb on + strandat 208.538 kb on + strandat 208.545 kb on - strandat 208.592 kb on + strandat 208.684 kb on + strand, within EX28DRAFT_0251at 208.684 kb on + strand, within EX28DRAFT_0251at 208.684 kb on + strand, within EX28DRAFT_0251at 208.726 kb on + strand, within EX28DRAFT_0251at 208.835 kb on - strand, within EX28DRAFT_0251at 208.837 kb on - strand, within EX28DRAFT_0251

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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204,917 + EX28DRAFT_0248 0.72 +1.5
204,917 + EX28DRAFT_0248 0.72 +0.6
204,940 + EX28DRAFT_0248 0.73 +0.5
204,960 - EX28DRAFT_0248 0.73 -3.7
205,007 + EX28DRAFT_0248 0.75 -0.1
205,121 + EX28DRAFT_0248 0.79 -2.8
205,269 + EX28DRAFT_0248 0.85 +0.8
205,514 - +2.2
205,558 - +1.9
205,558 - +1.6
205,604 - -3.2
205,648 - -0.2
205,682 + +1.4
206,035 + EX28DRAFT_0249 0.16 -0.7
206,035 + EX28DRAFT_0249 0.16 -1.9
206,036 - EX28DRAFT_0249 0.16 +0.3
206,036 - EX28DRAFT_0249 0.16 +2.0
206,124 - EX28DRAFT_0249 0.19 +0.9
206,158 + EX28DRAFT_0249 0.21 +0.1
206,159 - EX28DRAFT_0249 0.21 +2.2
206,245 - EX28DRAFT_0249 0.25 -4.1
206,263 + EX28DRAFT_0249 0.25 -0.6
206,404 + EX28DRAFT_0249 0.31 -1.5
206,404 + EX28DRAFT_0249 0.31 +0.4
206,410 + EX28DRAFT_0249 0.31 +0.7
206,411 - EX28DRAFT_0249 0.32 +0.6
206,411 - EX28DRAFT_0249 0.32 -0.1
206,431 - EX28DRAFT_0249 0.32 +0.7
206,436 + EX28DRAFT_0249 0.33 +0.6
206,437 - EX28DRAFT_0249 0.33 +0.4
206,473 + EX28DRAFT_0249 0.34 -0.0
206,491 + EX28DRAFT_0249 0.35 -0.3
206,503 + EX28DRAFT_0249 0.35 -1.5
206,504 - EX28DRAFT_0249 0.35 +0.7
206,504 - EX28DRAFT_0249 0.35 +0.5
206,504 - EX28DRAFT_0249 0.35 -0.5
206,525 - EX28DRAFT_0249 0.36 +0.1
206,870 - EX28DRAFT_0249 0.51 -0.0
207,065 - EX28DRAFT_0249 0.59 -0.2
207,122 - EX28DRAFT_0249 0.61 +1.6
207,193 - EX28DRAFT_0249 0.64 +1.3
207,211 + EX28DRAFT_0249 0.65 +0.3
207,334 - EX28DRAFT_0249 0.70 +4.5
207,579 - EX28DRAFT_0249 0.81 +1.6
207,630 + EX28DRAFT_0249 0.83 +0.1
207,633 + EX28DRAFT_0249 0.83 -0.3
207,710 - EX28DRAFT_0249 0.86 +0.4
207,710 - EX28DRAFT_0249 0.86 -0.7
207,810 + -0.0
207,820 - -1.3
207,855 + +1.4
207,916 - -0.5
208,020 - +2.3
208,030 - -1.0
208,033 + -1.3
208,036 + -1.4
208,159 + EX28DRAFT_0250 0.40 -1.6
208,234 - EX28DRAFT_0250 0.68 -2.3
208,234 - EX28DRAFT_0250 0.68 -0.4
208,283 - EX28DRAFT_0250 0.87 -3.8
208,343 + -3.3
208,363 + +0.8
208,380 + +0.4
208,381 - -2.3
208,418 + +0.3
208,442 - -0.8
208,444 + +0.9
208,445 - -0.5
208,511 + +1.3
208,538 + +0.1
208,545 - +0.4
208,592 + +0.9
208,684 + EX28DRAFT_0251 0.11 -1.0
208,684 + EX28DRAFT_0251 0.11 -0.2
208,684 + EX28DRAFT_0251 0.11 -2.2
208,726 + EX28DRAFT_0251 0.13 +1.8
208,835 - EX28DRAFT_0251 0.17 -1.5
208,837 - EX28DRAFT_0251 0.17 +0.9

Or see this region's nucleotide sequence