Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0235

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0234 and EX28DRAFT_0235 are separated by 185 nucleotidesEX28DRAFT_0235 and EX28DRAFT_0236 are separated by 0 nucleotides EX28DRAFT_0234: EX28DRAFT_0234 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 185,004 to 186,002 _0234 EX28DRAFT_0235: EX28DRAFT_0235 - indolepyruvate decarboxylase, Erwinia family, at 186,188 to 187,846 _0235 EX28DRAFT_0236: EX28DRAFT_0236 - Chloride channel protein EriC, at 187,847 to 189,082 _0236 Position (kb) 186 187 188Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 185.214 kb on + strand, within EX28DRAFT_0234at 185.215 kb on - strand, within EX28DRAFT_0234at 185.348 kb on + strand, within EX28DRAFT_0234at 185.348 kb on + strand, within EX28DRAFT_0234at 185.462 kb on + strand, within EX28DRAFT_0234at 185.494 kb on + strand, within EX28DRAFT_0234at 185.513 kb on - strand, within EX28DRAFT_0234at 185.603 kb on + strand, within EX28DRAFT_0234at 185.603 kb on + strand, within EX28DRAFT_0234at 185.612 kb on - strand, within EX28DRAFT_0234at 185.612 kb on - strand, within EX28DRAFT_0234at 185.612 kb on - strand, within EX28DRAFT_0234at 185.702 kb on + strand, within EX28DRAFT_0234at 185.703 kb on - strand, within EX28DRAFT_0234at 185.705 kb on - strand, within EX28DRAFT_0234at 185.806 kb on + strand, within EX28DRAFT_0234at 185.806 kb on + strand, within EX28DRAFT_0234at 185.806 kb on + strand, within EX28DRAFT_0234at 185.807 kb on - strand, within EX28DRAFT_0234at 186.040 kb on - strandat 186.172 kb on - strandat 186.179 kb on + strandat 186.201 kb on - strandat 186.216 kb on - strandat 186.346 kb on - strandat 186.357 kb on - strand, within EX28DRAFT_0235at 186.382 kb on + strand, within EX28DRAFT_0235at 186.383 kb on - strand, within EX28DRAFT_0235at 186.417 kb on + strand, within EX28DRAFT_0235at 186.418 kb on - strand, within EX28DRAFT_0235at 186.456 kb on - strand, within EX28DRAFT_0235at 186.481 kb on + strand, within EX28DRAFT_0235at 186.481 kb on + strand, within EX28DRAFT_0235at 186.482 kb on - strand, within EX28DRAFT_0235at 186.482 kb on - strand, within EX28DRAFT_0235at 186.482 kb on - strand, within EX28DRAFT_0235at 186.486 kb on + strand, within EX28DRAFT_0235at 186.535 kb on + strand, within EX28DRAFT_0235at 186.571 kb on + strand, within EX28DRAFT_0235at 186.571 kb on + strand, within EX28DRAFT_0235at 186.572 kb on - strand, within EX28DRAFT_0235at 186.645 kb on + strand, within EX28DRAFT_0235at 186.645 kb on + strand, within EX28DRAFT_0235at 186.645 kb on + strand, within EX28DRAFT_0235at 186.646 kb on - strand, within EX28DRAFT_0235at 186.649 kb on + strand, within EX28DRAFT_0235at 186.650 kb on - strand, within EX28DRAFT_0235at 186.650 kb on - strand, within EX28DRAFT_0235at 186.650 kb on - strand, within EX28DRAFT_0235at 186.681 kb on + strand, within EX28DRAFT_0235at 186.681 kb on + strand, within EX28DRAFT_0235at 186.681 kb on + strand, within EX28DRAFT_0235at 186.681 kb on + strand, within EX28DRAFT_0235at 186.682 kb on - strand, within EX28DRAFT_0235at 186.682 kb on - strand, within EX28DRAFT_0235at 186.682 kb on - strand, within EX28DRAFT_0235at 186.682 kb on - strand, within EX28DRAFT_0235at 186.682 kb on - strand, within EX28DRAFT_0235at 186.726 kb on + strand, within EX28DRAFT_0235at 186.821 kb on - strand, within EX28DRAFT_0235at 186.968 kb on + strand, within EX28DRAFT_0235at 187.512 kb on + strand, within EX28DRAFT_0235at 187.580 kb on + strand, within EX28DRAFT_0235at 187.580 kb on + strand, within EX28DRAFT_0235at 187.619 kb on + strand, within EX28DRAFT_0235at 187.621 kb on + strand, within EX28DRAFT_0235at 187.621 kb on + strand, within EX28DRAFT_0235at 187.622 kb on - strand, within EX28DRAFT_0235at 187.622 kb on - strand, within EX28DRAFT_0235at 187.817 kb on - strandat 187.849 kb on - strandat 188.018 kb on - strand, within EX28DRAFT_0236at 188.161 kb on + strand, within EX28DRAFT_0236at 188.161 kb on + strand, within EX28DRAFT_0236at 188.182 kb on - strand, within EX28DRAFT_0236at 188.195 kb on - strand, within EX28DRAFT_0236at 188.306 kb on + strand, within EX28DRAFT_0236at 188.306 kb on + strand, within EX28DRAFT_0236at 188.306 kb on + strand, within EX28DRAFT_0236at 188.307 kb on - strand, within EX28DRAFT_0236at 188.327 kb on - strand, within EX28DRAFT_0236at 188.327 kb on - strand, within EX28DRAFT_0236at 188.416 kb on + strand, within EX28DRAFT_0236at 188.702 kb on - strand, within EX28DRAFT_0236

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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185,214 + EX28DRAFT_0234 0.21 +0.6
185,215 - EX28DRAFT_0234 0.21 +0.1
185,348 + EX28DRAFT_0234 0.34 -1.2
185,348 + EX28DRAFT_0234 0.34 -0.7
185,462 + EX28DRAFT_0234 0.46 -0.0
185,494 + EX28DRAFT_0234 0.49 -0.7
185,513 - EX28DRAFT_0234 0.51 -1.2
185,603 + EX28DRAFT_0234 0.60 +1.1
185,603 + EX28DRAFT_0234 0.60 -2.6
185,612 - EX28DRAFT_0234 0.61 -2.1
185,612 - EX28DRAFT_0234 0.61 -0.9
185,612 - EX28DRAFT_0234 0.61 +0.2
185,702 + EX28DRAFT_0234 0.70 +1.5
185,703 - EX28DRAFT_0234 0.70 +0.9
185,705 - EX28DRAFT_0234 0.70 -2.7
185,806 + EX28DRAFT_0234 0.80 -0.3
185,806 + EX28DRAFT_0234 0.80 +0.3
185,806 + EX28DRAFT_0234 0.80 -1.5
185,807 - EX28DRAFT_0234 0.80 +0.9
186,040 - -0.5
186,172 - -0.1
186,179 + -0.8
186,201 - -0.1
186,216 - -0.2
186,346 - +0.9
186,357 - EX28DRAFT_0235 0.10 +0.2
186,382 + EX28DRAFT_0235 0.12 -0.1
186,383 - EX28DRAFT_0235 0.12 +0.8
186,417 + EX28DRAFT_0235 0.14 -3.1
186,418 - EX28DRAFT_0235 0.14 -4.1
186,456 - EX28DRAFT_0235 0.16 +0.3
186,481 + EX28DRAFT_0235 0.18 -0.3
186,481 + EX28DRAFT_0235 0.18 +1.0
186,482 - EX28DRAFT_0235 0.18 -3.4
186,482 - EX28DRAFT_0235 0.18 +0.0
186,482 - EX28DRAFT_0235 0.18 +0.0
186,486 + EX28DRAFT_0235 0.18 +1.2
186,535 + EX28DRAFT_0235 0.21 -0.5
186,571 + EX28DRAFT_0235 0.23 -1.3
186,571 + EX28DRAFT_0235 0.23 +0.3
186,572 - EX28DRAFT_0235 0.23 +0.3
186,645 + EX28DRAFT_0235 0.28 +1.7
186,645 + EX28DRAFT_0235 0.28 -2.0
186,645 + EX28DRAFT_0235 0.28 -2.4
186,646 - EX28DRAFT_0235 0.28 +0.7
186,649 + EX28DRAFT_0235 0.28 -5.0
186,650 - EX28DRAFT_0235 0.28 -0.3
186,650 - EX28DRAFT_0235 0.28 +0.4
186,650 - EX28DRAFT_0235 0.28 +3.2
186,681 + EX28DRAFT_0235 0.30 +0.1
186,681 + EX28DRAFT_0235 0.30 -2.4
186,681 + EX28DRAFT_0235 0.30 -0.8
186,681 + EX28DRAFT_0235 0.30 +1.3
186,682 - EX28DRAFT_0235 0.30 +0.6
186,682 - EX28DRAFT_0235 0.30 +1.8
186,682 - EX28DRAFT_0235 0.30 +0.4
186,682 - EX28DRAFT_0235 0.30 +0.9
186,682 - EX28DRAFT_0235 0.30 +0.9
186,726 + EX28DRAFT_0235 0.32 -0.8
186,821 - EX28DRAFT_0235 0.38 +3.8
186,968 + EX28DRAFT_0235 0.47 +1.3
187,512 + EX28DRAFT_0235 0.80 +0.7
187,580 + EX28DRAFT_0235 0.84 -0.2
187,580 + EX28DRAFT_0235 0.84 -0.5
187,619 + EX28DRAFT_0235 0.86 -0.1
187,621 + EX28DRAFT_0235 0.86 +0.3
187,621 + EX28DRAFT_0235 0.86 +1.0
187,622 - EX28DRAFT_0235 0.86 +2.8
187,622 - EX28DRAFT_0235 0.86 +0.8
187,817 - -0.6
187,849 - +0.0
188,018 - EX28DRAFT_0236 0.14 -1.3
188,161 + EX28DRAFT_0236 0.25 -2.7
188,161 + EX28DRAFT_0236 0.25 -0.5
188,182 - EX28DRAFT_0236 0.27 -1.1
188,195 - EX28DRAFT_0236 0.28 +0.0
188,306 + EX28DRAFT_0236 0.37 -0.3
188,306 + EX28DRAFT_0236 0.37 -1.5
188,306 + EX28DRAFT_0236 0.37 +0.5
188,307 - EX28DRAFT_0236 0.37 -0.2
188,327 - EX28DRAFT_0236 0.39 +0.3
188,327 - EX28DRAFT_0236 0.39 -4.4
188,416 + EX28DRAFT_0236 0.46 -2.8
188,702 - EX28DRAFT_0236 0.69 -4.1

Or see this region's nucleotide sequence