Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0171 and EX28DRAFT_0172 are separated by 81 nucleotides EX28DRAFT_0172 and EX28DRAFT_0173 are separated by 41 nucleotides EX28DRAFT_0173 and EX28DRAFT_0174 overlap by 1 nucleotides EX28DRAFT_0174 and EX28DRAFT_0175 are separated by 3 nucleotides
EX28DRAFT_0171: EX28DRAFT_0171 - uracil-xanthine permease, at 120,367 to 121,656
_0171
EX28DRAFT_0172: EX28DRAFT_0172 - regulatory inactivation of DnaA Hda protein, at 121,738 to 122,454
_0172
EX28DRAFT_0173: EX28DRAFT_0173 - Leucyl aminopeptidase, at 122,496 to 123,914
_0173
EX28DRAFT_0174: EX28DRAFT_0174 - Asparaginase, at 123,914 to 124,870
_0174
EX28DRAFT_0175: EX28DRAFT_0175 - phosphotransferase system, cellobiose specific, IIC component, at 124,874 to 126,193
_0175
Position (kb) 122
123
124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 121.730 kb on + strand at 122.452 kb on + strand at 122.453 kb on - strand at 122.453 kb on - strand at 122.497 kb on + strand at 122.556 kb on - strand at 122.588 kb on + strand at 122.877 kb on - strand, within EX28DRAFT_0173 at 122.877 kb on - strand, within EX28DRAFT_0173 at 122.879 kb on + strand, within EX28DRAFT_0173 at 122.882 kb on - strand, within EX28DRAFT_0173 at 123.130 kb on + strand, within EX28DRAFT_0173 at 123.131 kb on - strand, within EX28DRAFT_0173 at 123.142 kb on + strand, within EX28DRAFT_0173 at 123.142 kb on + strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.188 kb on + strand, within EX28DRAFT_0173 at 123.188 kb on + strand, within EX28DRAFT_0173 at 123.205 kb on + strand, within EX28DRAFT_0173 at 123.205 kb on + strand, within EX28DRAFT_0173 at 123.206 kb on - strand, within EX28DRAFT_0173 at 123.206 kb on - strand, within EX28DRAFT_0173 at 123.648 kb on + strand, within EX28DRAFT_0173 at 123.839 kb on + strand at 123.896 kb on + strand at 123.896 kb on + strand at 123.897 kb on - strand at 123.905 kb on - strand at 123.905 kb on - strand at 123.908 kb on + strand at 123.908 kb on + strand at 123.908 kb on + strand at 123.951 kb on + strand at 123.952 kb on - strand at 123.985 kb on - strand at 124.113 kb on - strand, within EX28DRAFT_0174 at 124.202 kb on - strand, within EX28DRAFT_0174 at 124.302 kb on + strand, within EX28DRAFT_0174 at 124.510 kb on + strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.578 kb on + strand, within EX28DRAFT_0174 at 124.660 kb on + strand, within EX28DRAFT_0174 at 124.735 kb on + strand, within EX28DRAFT_0174 at 124.875 kb on + strand at 124.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 121,730 + +2.9 122,452 + -4.4 122,453 - -0.1 122,453 - +1.1 122,497 + +0.3 122,556 - -0.3 122,588 + +0.5 122,877 - EX28DRAFT_0173 0.27 +0.2 122,877 - EX28DRAFT_0173 0.27 +0.1 122,879 + EX28DRAFT_0173 0.27 +1.8 122,882 - EX28DRAFT_0173 0.27 -3.4 123,130 + EX28DRAFT_0173 0.45 -1.0 123,131 - EX28DRAFT_0173 0.45 -0.1 123,142 + EX28DRAFT_0173 0.46 +0.3 123,142 + EX28DRAFT_0173 0.46 -1.1 123,143 - EX28DRAFT_0173 0.46 -3.6 123,143 - EX28DRAFT_0173 0.46 +0.2 123,143 - EX28DRAFT_0173 0.46 +0.3 123,143 - EX28DRAFT_0173 0.46 +0.9 123,143 - EX28DRAFT_0173 0.46 +0.3 123,188 + EX28DRAFT_0173 0.49 -0.2 123,188 + EX28DRAFT_0173 0.49 +0.6 123,205 + EX28DRAFT_0173 0.50 -1.8 123,205 + EX28DRAFT_0173 0.50 -0.1 123,206 - EX28DRAFT_0173 0.50 +0.1 123,206 - EX28DRAFT_0173 0.50 -0.4 123,648 + EX28DRAFT_0173 0.81 +0.8 123,839 + -2.6 123,896 + -0.7 123,896 + -2.7 123,897 - +1.9 123,905 - +0.6 123,905 - +0.8 123,908 + +1.1 123,908 + -0.1 123,908 + -1.2 123,951 + +0.7 123,952 - +0.2 123,985 - +0.7 124,113 - EX28DRAFT_0174 0.21 +0.1 124,202 - EX28DRAFT_0174 0.30 +0.7 124,302 + EX28DRAFT_0174 0.41 +0.1 124,510 + EX28DRAFT_0174 0.62 +0.6 124,511 - EX28DRAFT_0174 0.62 -3.3 124,511 - EX28DRAFT_0174 0.62 +0.3 124,511 - EX28DRAFT_0174 0.62 +0.0 124,511 - EX28DRAFT_0174 0.62 -0.5 124,578 + EX28DRAFT_0174 0.69 +2.5 124,660 + EX28DRAFT_0174 0.78 +0.1 124,735 + EX28DRAFT_0174 0.86 +0.0 124,875 + +0.1 124,876 - +1.3
Or see this region's nucleotide sequence