Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0141

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0140 and EX28DRAFT_0141 are separated by 145 nucleotidesEX28DRAFT_0141 and EX28DRAFT_0142 are separated by 160 nucleotides EX28DRAFT_0140: EX28DRAFT_0140 - GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit, at 84,605 to 86,182 _0140 EX28DRAFT_0141: EX28DRAFT_0141 - hypothetical protein, at 86,328 to 86,546 _0141 EX28DRAFT_0142: EX28DRAFT_0142 - hypothetical protein, at 86,707 to 86,883 _0142 Position (kb) 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 86.223 kb on + strandat 86.229 kb on + strandat 86.304 kb on - strandat 86.308 kb on + strandat 86.308 kb on + strandat 86.308 kb on + strandat 86.308 kb on + strandat 86.308 kb on + strandat 86.309 kb on - strandat 86.309 kb on - strandat 86.309 kb on - strandat 86.322 kb on - strandat 86.482 kb on - strand, within EX28DRAFT_0141at 86.482 kb on - strand, within EX28DRAFT_0141at 86.501 kb on + strand, within EX28DRAFT_0141at 86.535 kb on - strandat 86.535 kb on - strandat 86.536 kb on + strandat 86.536 kb on + strandat 86.536 kb on + strandat 86.536 kb on + strandat 86.536 kb on + strandat 86.537 kb on - strandat 86.537 kb on - strandat 86.537 kb on - strandat 86.537 kb on - strandat 86.537 kb on - strandat 86.538 kb on + strandat 86.539 kb on - strandat 86.539 kb on - strandat 86.539 kb on - strandat 86.547 kb on - strandat 86.592 kb on + strandat 86.592 kb on + strandat 86.593 kb on - strandat 86.593 kb on - strandat 86.615 kb on - strandat 86.622 kb on - strandat 86.627 kb on + strandat 86.627 kb on + strandat 86.699 kb on + strandat 86.722 kb on - strandat 86.752 kb on - strand, within EX28DRAFT_0142at 86.760 kb on + strand, within EX28DRAFT_0142at 86.761 kb on - strand, within EX28DRAFT_0142at 86.795 kb on - strand, within EX28DRAFT_0142at 86.849 kb on + strand, within EX28DRAFT_0142at 86.849 kb on + strand, within EX28DRAFT_0142at 86.850 kb on - strand, within EX28DRAFT_0142at 86.865 kb on + strand, within EX28DRAFT_0142at 86.941 kb on + strandat 86.986 kb on - strandat 86.986 kb on - strandat 86.998 kb on + strandat 87.018 kb on - strandat 87.035 kb on - strandat 87.035 kb on - strandat 87.038 kb on + strandat 87.038 kb on + strandat 87.050 kb on - strandat 87.083 kb on - strandat 87.217 kb on - strandat 87.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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86,223 + +0.3
86,229 + +0.9
86,304 - -2.0
86,308 + -0.3
86,308 + -2.4
86,308 + -4.0
86,308 + -3.3
86,308 + +0.2
86,309 - +1.4
86,309 - -1.4
86,309 - +0.6
86,322 - +0.7
86,482 - EX28DRAFT_0141 0.70 -0.9
86,482 - EX28DRAFT_0141 0.70 +1.7
86,501 + EX28DRAFT_0141 0.79 +1.7
86,535 - -0.4
86,535 - +0.2
86,536 + +1.3
86,536 + +0.1
86,536 + +1.0
86,536 + -2.0
86,536 + +0.8
86,537 - +1.9
86,537 - -0.6
86,537 - -0.2
86,537 - -0.5
86,537 - +0.1
86,538 + -3.0
86,539 - -0.1
86,539 - -0.1
86,539 - +0.3
86,547 - +0.1
86,592 + -0.7
86,592 + -0.7
86,593 - -1.3
86,593 - -0.4
86,615 - -3.8
86,622 - +0.3
86,627 + -4.4
86,627 + +1.5
86,699 + -2.2
86,722 - -1.5
86,752 - EX28DRAFT_0142 0.25 +2.2
86,760 + EX28DRAFT_0142 0.30 -3.5
86,761 - EX28DRAFT_0142 0.31 -3.6
86,795 - EX28DRAFT_0142 0.50 -1.7
86,849 + EX28DRAFT_0142 0.80 +0.7
86,849 + EX28DRAFT_0142 0.80 -2.8
86,850 - EX28DRAFT_0142 0.81 -1.0
86,865 + EX28DRAFT_0142 0.89 -0.7
86,941 + -1.8
86,986 - -0.5
86,986 - -0.0
86,998 + -4.5
87,018 - +0.4
87,035 - -3.0
87,035 - -1.2
87,038 + +0.3
87,038 + -1.8
87,050 - -2.8
87,083 - -1.2
87,217 - +0.2
87,530 + +1.1

Or see this region's nucleotide sequence