Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0038 and EX28DRAFT_0039 are separated by 22 nucleotides EX28DRAFT_0039 and EX28DRAFT_0040 are separated by 76 nucleotides
EX28DRAFT_0038: EX28DRAFT_0038 - K+ transport systems, NAD-binding component, at 17,653 to 19,029
_0038
EX28DRAFT_0039: EX28DRAFT_0039 - 16S rRNA (cytosine(967)-C(5))-methyltransferase, at 19,052 to 20,314
_0039
EX28DRAFT_0040: EX28DRAFT_0040 - methionyl-tRNA formyltransferase, at 20,391 to 21,338
_0040
Position (kb) 19
20
21 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 18.097 kb on - strand, within EX28DRAFT_0038 at 18.333 kb on + strand, within EX28DRAFT_0038 at 18.630 kb on - strand, within EX28DRAFT_0038 at 19.227 kb on + strand, within EX28DRAFT_0039 at 19.228 kb on - strand, within EX28DRAFT_0039 at 19.303 kb on + strand, within EX28DRAFT_0039 at 19.306 kb on + strand, within EX28DRAFT_0039 at 19.307 kb on - strand, within EX28DRAFT_0039 at 19.553 kb on - strand, within EX28DRAFT_0039 at 19.653 kb on - strand, within EX28DRAFT_0039 at 19.691 kb on + strand, within EX28DRAFT_0039 at 19.715 kb on + strand, within EX28DRAFT_0039 at 20.086 kb on - strand, within EX28DRAFT_0039 at 20.099 kb on - strand, within EX28DRAFT_0039 at 20.107 kb on - strand, within EX28DRAFT_0039 at 20.112 kb on - strand, within EX28DRAFT_0039 at 20.268 kb on - strand at 20.321 kb on + strand at 20.322 kb on - strand at 20.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 18,097 - EX28DRAFT_0038 0.32 -1.1 18,333 + EX28DRAFT_0038 0.49 -3.6 18,630 - EX28DRAFT_0038 0.71 -3.9 19,227 + EX28DRAFT_0039 0.14 +2.6 19,228 - EX28DRAFT_0039 0.14 +0.5 19,303 + EX28DRAFT_0039 0.20 -1.3 19,306 + EX28DRAFT_0039 0.20 +0.8 19,307 - EX28DRAFT_0039 0.20 +0.8 19,553 - EX28DRAFT_0039 0.40 +0.8 19,653 - EX28DRAFT_0039 0.48 +1.0 19,691 + EX28DRAFT_0039 0.51 -2.7 19,715 + EX28DRAFT_0039 0.52 -2.0 20,086 - EX28DRAFT_0039 0.82 -0.3 20,099 - EX28DRAFT_0039 0.83 +0.4 20,107 - EX28DRAFT_0039 0.84 +0.7 20,112 - EX28DRAFT_0039 0.84 +1.2 20,268 - +0.3 20,321 + -4.8 20,322 - +0.2 20,383 - +0.6
Or see this region's nucleotide sequence