Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22365 and ABIE41_RS22370 are separated by 323 nucleotides ABIE41_RS22370 and ABIE41_RS22375 are separated by 8 nucleotides ABIE41_RS22375 and ABIE41_RS22380 are separated by 78 nucleotides ABIE41_RS22380 and ABIE41_RS22385 are separated by 178 nucleotides ABIE41_RS22385 and ABIE41_RS22390 are separated by 269 nucleotides
ABIE41_RS22365: ABIE41_RS22365 - hypothetical protein, at 4,604,777 to 4,605,400
_RS22365
ABIE41_RS22370: ABIE41_RS22370 - hypothetical protein, at 4,605,724 to 4,605,993
_RS22370
ABIE41_RS22375: ABIE41_RS22375 - translation initiation factor IF-1, at 4,606,002 to 4,606,274
_RS22375
ABIE41_RS22380: ABIE41_RS22380 - DEAD/DEAH box helicase, at 4,606,353 to 4,607,789
_RS22380
ABIE41_RS22385: ABIE41_RS22385 - cold-shock protein, at 4,607,968 to 4,608,177
_RS22385
ABIE41_RS22390: ABIE41_RS22390 - pyruvate, phosphate dikinase, at 4,608,447 to 4,611,132
_RS22390
Position (kb)
4606
4607
4608 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4605.595 kb on - strand at 4605.621 kb on + strand at 4605.621 kb on + strand at 4605.621 kb on + strand at 4605.666 kb on + strand at 4605.666 kb on + strand at 4605.673 kb on + strand at 4605.674 kb on - strand at 4605.674 kb on - strand at 4605.674 kb on - strand at 4606.804 kb on + strand, within ABIE41_RS22380 at 4606.804 kb on + strand, within ABIE41_RS22380 at 4606.804 kb on + strand, within ABIE41_RS22380 at 4606.805 kb on - strand, within ABIE41_RS22380 at 4606.805 kb on - strand, within ABIE41_RS22380 at 4606.805 kb on - strand, within ABIE41_RS22380 at 4606.805 kb on - strand, within ABIE41_RS22380 at 4606.805 kb on - strand, within ABIE41_RS22380 at 4606.899 kb on - strand, within ABIE41_RS22380 at 4607.725 kb on + strand at 4607.725 kb on + strand at 4607.725 kb on + strand at 4607.778 kb on - strand at 4607.871 kb on - strand at 4607.871 kb on - strand at 4608.207 kb on + strand at 4608.207 kb on + strand at 4608.208 kb on - strand at 4608.208 kb on - strand at 4608.209 kb on + strand at 4608.209 kb on + strand at 4608.209 kb on + strand at 4608.210 kb on - strand at 4608.255 kb on + strand at 4608.342 kb on - strand at 4608.342 kb on - strand at 4608.355 kb on + strand at 4608.356 kb on - strand at 4608.356 kb on - strand at 4608.361 kb on - strand at 4608.536 kb on - strand at 4608.536 kb on - strand at 4608.536 kb on - strand at 4608.721 kb on + strand, within ABIE41_RS22390 at 4608.721 kb on + strand, within ABIE41_RS22390 at 4608.721 kb on + strand, within ABIE41_RS22390 at 4608.722 kb on - strand, within ABIE41_RS22390
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 4,605,595 - -1.0 4,605,621 + +0.1 4,605,621 + +0.9 4,605,621 + +0.2 4,605,666 + +0.0 4,605,666 + -0.6 4,605,673 + +0.5 4,605,674 - +0.5 4,605,674 - -0.0 4,605,674 - +0.3 4,606,804 + ABIE41_RS22380 0.31 -0.9 4,606,804 + ABIE41_RS22380 0.31 -0.8 4,606,804 + ABIE41_RS22380 0.31 -0.5 4,606,805 - ABIE41_RS22380 0.31 +0.2 4,606,805 - ABIE41_RS22380 0.31 -0.5 4,606,805 - ABIE41_RS22380 0.31 -0.6 4,606,805 - ABIE41_RS22380 0.31 -1.4 4,606,805 - ABIE41_RS22380 0.31 +1.1 4,606,899 - ABIE41_RS22380 0.38 -0.1 4,607,725 + +0.2 4,607,725 + +0.5 4,607,725 + -1.4 4,607,778 - +0.1 4,607,871 - +0.3 4,607,871 - -1.0 4,608,207 + +0.2 4,608,207 + +0.1 4,608,208 - -0.1 4,608,208 - -0.6 4,608,209 + -0.1 4,608,209 + +1.0 4,608,209 + +0.2 4,608,210 - +0.7 4,608,255 + +0.5 4,608,342 - +0.0 4,608,342 - -0.9 4,608,355 + -0.3 4,608,356 - -2.1 4,608,356 - +0.0 4,608,361 - -0.8 4,608,536 - -2.1 4,608,536 - -1.7 4,608,536 - -2.2 4,608,721 + ABIE41_RS22390 0.10 -3.2 4,608,721 + ABIE41_RS22390 0.10 -1.6 4,608,721 + ABIE41_RS22390 0.10 +1.0 4,608,722 - ABIE41_RS22390 0.10 -1.3
Or see this region's nucleotide sequence