Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20470 and ABIE41_RS20475 are separated by 76 nucleotides ABIE41_RS20475 and ABIE41_RS20480 are separated by 86 nucleotides ABIE41_RS20480 and ABIE41_RS20485 are separated by 9 nucleotides
ABIE41_RS20470: ABIE41_RS20470 - MFS transporter, at 4,207,598 to 4,208,944
_RS20470
ABIE41_RS20475: ABIE41_RS20475 - ROK family protein, at 4,209,021 to 4,210,241
_RS20475
ABIE41_RS20480: ABIE41_RS20480 - glucosamine-6-phosphate deaminase, at 4,210,328 to 4,211,071
_RS20480
ABIE41_RS20485: ABIE41_RS20485 - amidohydrolase family protein, at 4,211,081 to 4,212,151
_RS20485
Position (kb)
4209
4210
4211 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4208.028 kb on - strand, within ABIE41_RS20470 at 4208.087 kb on + strand, within ABIE41_RS20470 at 4208.087 kb on + strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.088 kb on - strand, within ABIE41_RS20470 at 4208.195 kb on + strand, within ABIE41_RS20470 at 4208.225 kb on + strand, within ABIE41_RS20470 at 4208.226 kb on - strand, within ABIE41_RS20470 at 4208.305 kb on + strand, within ABIE41_RS20470 at 4208.418 kb on + strand, within ABIE41_RS20470 at 4208.419 kb on - strand, within ABIE41_RS20470 at 4208.576 kb on + strand, within ABIE41_RS20470 at 4208.577 kb on - strand, within ABIE41_RS20470 at 4208.577 kb on - strand, within ABIE41_RS20470 at 4208.693 kb on + strand, within ABIE41_RS20470 at 4208.693 kb on + strand, within ABIE41_RS20470 at 4208.694 kb on - strand, within ABIE41_RS20470 at 4208.964 kb on + strand at 4208.965 kb on - strand at 4210.538 kb on + strand, within ABIE41_RS20480 at 4210.538 kb on + strand, within ABIE41_RS20480 at 4210.539 kb on - strand, within ABIE41_RS20480 at 4210.539 kb on - strand, within ABIE41_RS20480 at 4210.784 kb on + strand, within ABIE41_RS20480 at 4210.784 kb on + strand, within ABIE41_RS20480 at 4210.784 kb on + strand, within ABIE41_RS20480 at 4210.785 kb on - strand, within ABIE41_RS20480 at 4210.785 kb on - strand, within ABIE41_RS20480 at 4210.785 kb on - strand, within ABIE41_RS20480
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 4,208,028 - ABIE41_RS20470 0.32 -1.8 4,208,087 + ABIE41_RS20470 0.36 -2.0 4,208,087 + ABIE41_RS20470 0.36 -2.0 4,208,088 - ABIE41_RS20470 0.36 +0.6 4,208,088 - ABIE41_RS20470 0.36 +0.3 4,208,088 - ABIE41_RS20470 0.36 -1.8 4,208,088 - ABIE41_RS20470 0.36 +0.7 4,208,088 - ABIE41_RS20470 0.36 +0.5 4,208,195 + ABIE41_RS20470 0.44 -0.7 4,208,225 + ABIE41_RS20470 0.47 -0.1 4,208,226 - ABIE41_RS20470 0.47 -0.2 4,208,305 + ABIE41_RS20470 0.52 +0.2 4,208,418 + ABIE41_RS20470 0.61 -1.2 4,208,419 - ABIE41_RS20470 0.61 +0.2 4,208,576 + ABIE41_RS20470 0.73 +2.1 4,208,577 - ABIE41_RS20470 0.73 -1.1 4,208,577 - ABIE41_RS20470 0.73 -2.5 4,208,693 + ABIE41_RS20470 0.81 -1.3 4,208,693 + ABIE41_RS20470 0.81 -0.2 4,208,694 - ABIE41_RS20470 0.81 -1.3 4,208,964 + -0.2 4,208,965 - -2.0 4,210,538 + ABIE41_RS20480 0.28 -1.1 4,210,538 + ABIE41_RS20480 0.28 -0.4 4,210,539 - ABIE41_RS20480 0.28 -1.4 4,210,539 - ABIE41_RS20480 0.28 +0.6 4,210,784 + ABIE41_RS20480 0.61 +0.2 4,210,784 + ABIE41_RS20480 0.61 +2.5 4,210,784 + ABIE41_RS20480 0.61 -2.2 4,210,785 - ABIE41_RS20480 0.61 -1.5 4,210,785 - ABIE41_RS20480 0.61 +0.3 4,210,785 - ABIE41_RS20480 0.61 +0.2
Or see this region's nucleotide sequence