Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19160

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19150 and ABIE41_RS19155 are separated by 197 nucleotidesABIE41_RS19155 and ABIE41_RS19160 are separated by 96 nucleotidesABIE41_RS19160 and ABIE41_RS19165 are separated by 63 nucleotides ABIE41_RS19150: ABIE41_RS19150 - TRAP transporter substrate-binding protein DctP, at 3,951,095 to 3,952,084 _RS19150 ABIE41_RS19155: ABIE41_RS19155 - GntR family transcriptional regulator, at 3,952,282 to 3,952,953 _RS19155 ABIE41_RS19160: ABIE41_RS19160 - class II fructose-bisphosphatase, at 3,953,050 to 3,954,048 _RS19160 ABIE41_RS19165: ABIE41_RS19165 - homoserine dehydrogenase, at 3,954,112 to 3,955,458 _RS19165 Position (kb) 3953 3954 3955Strain fitness (log2 ratio) -2 -1 0 1at 3952.123 kb on - strandat 3952.163 kb on + strandat 3952.408 kb on + strand, within ABIE41_RS19155at 3952.409 kb on - strand, within ABIE41_RS19155at 3952.696 kb on + strand, within ABIE41_RS19155at 3952.696 kb on + strand, within ABIE41_RS19155at 3952.696 kb on + strand, within ABIE41_RS19155at 3952.697 kb on - strand, within ABIE41_RS19155at 3952.697 kb on - strand, within ABIE41_RS19155at 3952.697 kb on - strand, within ABIE41_RS19155at 3952.697 kb on - strand, within ABIE41_RS19155at 3952.771 kb on + strand, within ABIE41_RS19155at 3952.771 kb on + strand, within ABIE41_RS19155at 3952.773 kb on - strand, within ABIE41_RS19155at 3952.780 kb on + strand, within ABIE41_RS19155at 3952.780 kb on + strand, within ABIE41_RS19155at 3952.780 kb on + strand, within ABIE41_RS19155at 3952.780 kb on + strand, within ABIE41_RS19155at 3952.780 kb on + strand, within ABIE41_RS19155at 3952.781 kb on - strand, within ABIE41_RS19155at 3952.781 kb on - strand, within ABIE41_RS19155at 3952.789 kb on + strand, within ABIE41_RS19155at 3954.114 kb on - strandat 3954.213 kb on - strandat 3954.213 kb on - strandat 3954.213 kb on - strandat 3954.384 kb on - strand, within ABIE41_RS19165at 3954.384 kb on - strand, within ABIE41_RS19165at 3954.384 kb on - strand, within ABIE41_RS19165at 3954.384 kb on - strand, within ABIE41_RS19165at 3954.939 kb on - strand, within ABIE41_RS19165at 3954.939 kb on - strand, within ABIE41_RS19165at 3954.939 kb on - strand, within ABIE41_RS19165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,952,123 - +0.1
3,952,163 + +1.3
3,952,408 + ABIE41_RS19155 0.19 -0.3
3,952,409 - ABIE41_RS19155 0.19 -0.3
3,952,696 + ABIE41_RS19155 0.62 +1.1
3,952,696 + ABIE41_RS19155 0.62 -0.2
3,952,696 + ABIE41_RS19155 0.62 -0.6
3,952,697 - ABIE41_RS19155 0.62 +0.6
3,952,697 - ABIE41_RS19155 0.62 +0.3
3,952,697 - ABIE41_RS19155 0.62 -1.0
3,952,697 - ABIE41_RS19155 0.62 -0.7
3,952,771 + ABIE41_RS19155 0.73 +1.1
3,952,771 + ABIE41_RS19155 0.73 +1.0
3,952,773 - ABIE41_RS19155 0.73 +0.5
3,952,780 + ABIE41_RS19155 0.74 -2.0
3,952,780 + ABIE41_RS19155 0.74 +0.3
3,952,780 + ABIE41_RS19155 0.74 +0.0
3,952,780 + ABIE41_RS19155 0.74 +0.5
3,952,780 + ABIE41_RS19155 0.74 -0.3
3,952,781 - ABIE41_RS19155 0.74 +1.0
3,952,781 - ABIE41_RS19155 0.74 +1.0
3,952,789 + ABIE41_RS19155 0.75 +0.4
3,954,114 - +0.2
3,954,213 - -1.1
3,954,213 - -1.2
3,954,213 - -0.3
3,954,384 - ABIE41_RS19165 0.20 -1.1
3,954,384 - ABIE41_RS19165 0.20 -0.3
3,954,384 - ABIE41_RS19165 0.20 -1.3
3,954,384 - ABIE41_RS19165 0.20 -1.1
3,954,939 - ABIE41_RS19165 0.61 -0.1
3,954,939 - ABIE41_RS19165 0.61 -0.1
3,954,939 - ABIE41_RS19165 0.61 -0.9

Or see this region's nucleotide sequence