Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09000

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08995 and ABIE41_RS09000 are separated by 110 nucleotidesABIE41_RS09000 and ABIE41_RS09005 are separated by 127 nucleotides ABIE41_RS08995: ABIE41_RS08995 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,863,564 to 1,864,433 _RS08995 ABIE41_RS09000: ABIE41_RS09000 - cytosine deaminase, at 1,864,544 to 1,865,872 _RS09000 ABIE41_RS09005: ABIE41_RS09005 - FAD-binding oxidoreductase, at 1,866,000 to 1,867,424 _RS09005 Position (kb) 1864 1865 1866Strain fitness (log2 ratio) -2 -1 0 1 2at 1863.596 kb on + strandat 1863.596 kb on + strandat 1863.597 kb on - strandat 1863.597 kb on - strandat 1863.886 kb on - strand, within ABIE41_RS08995at 1863.886 kb on - strand, within ABIE41_RS08995at 1863.973 kb on - strand, within ABIE41_RS08995at 1864.845 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.165 kb on + strand, within ABIE41_RS09000at 1865.166 kb on - strand, within ABIE41_RS09000at 1865.166 kb on - strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.444 kb on + strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.445 kb on - strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.564 kb on + strand, within ABIE41_RS09000at 1865.565 kb on - strand, within ABIE41_RS09000at 1865.565 kb on - strand, within ABIE41_RS09000at 1865.565 kb on - strand, within ABIE41_RS09000at 1866.012 kb on + strandat 1866.252 kb on + strand, within ABIE41_RS09005at 1866.252 kb on + strand, within ABIE41_RS09005at 1866.252 kb on + strand, within ABIE41_RS09005at 1866.337 kb on - strand, within ABIE41_RS09005at 1866.337 kb on - strand, within ABIE41_RS09005at 1866.426 kb on + strand, within ABIE41_RS09005at 1866.427 kb on - strand, within ABIE41_RS09005at 1866.654 kb on + strand, within ABIE41_RS09005at 1866.654 kb on + strand, within ABIE41_RS09005at 1866.655 kb on - strand, within ABIE41_RS09005at 1866.655 kb on - strand, within ABIE41_RS09005at 1866.786 kb on + strand, within ABIE41_RS09005at 1866.787 kb on - strand, within ABIE41_RS09005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,863,596 + -1.2
1,863,596 + -0.7
1,863,597 - -0.7
1,863,597 - +0.4
1,863,886 - ABIE41_RS08995 0.37 -0.4
1,863,886 - ABIE41_RS08995 0.37 -1.6
1,863,973 - ABIE41_RS08995 0.47 -1.6
1,864,845 + ABIE41_RS09000 0.23 -0.6
1,865,165 + ABIE41_RS09000 0.47 +0.8
1,865,165 + ABIE41_RS09000 0.47 -1.7
1,865,165 + ABIE41_RS09000 0.47 +0.1
1,865,166 - ABIE41_RS09000 0.47 +1.5
1,865,166 - ABIE41_RS09000 0.47 -0.3
1,865,444 + ABIE41_RS09000 0.68 -0.2
1,865,444 + ABIE41_RS09000 0.68 -0.7
1,865,444 + ABIE41_RS09000 0.68 +0.3
1,865,444 + ABIE41_RS09000 0.68 -0.2
1,865,444 + ABIE41_RS09000 0.68 -2.3
1,865,444 + ABIE41_RS09000 0.68 -1.6
1,865,445 - ABIE41_RS09000 0.68 +0.5
1,865,445 - ABIE41_RS09000 0.68 +0.3
1,865,445 - ABIE41_RS09000 0.68 +0.5
1,865,445 - ABIE41_RS09000 0.68 -2.0
1,865,445 - ABIE41_RS09000 0.68 +0.6
1,865,445 - ABIE41_RS09000 0.68 -0.3
1,865,445 - ABIE41_RS09000 0.68 +1.4
1,865,445 - ABIE41_RS09000 0.68 -2.1
1,865,445 - ABIE41_RS09000 0.68 -0.1
1,865,445 - ABIE41_RS09000 0.68 -0.1
1,865,564 + ABIE41_RS09000 0.77 -0.8
1,865,564 + ABIE41_RS09000 0.77 -0.0
1,865,564 + ABIE41_RS09000 0.77 -0.6
1,865,564 + ABIE41_RS09000 0.77 +0.3
1,865,564 + ABIE41_RS09000 0.77 +1.3
1,865,565 - ABIE41_RS09000 0.77 +0.4
1,865,565 - ABIE41_RS09000 0.77 +0.8
1,865,565 - ABIE41_RS09000 0.77 +1.9
1,866,012 + -0.2
1,866,252 + ABIE41_RS09005 0.18 +0.2
1,866,252 + ABIE41_RS09005 0.18 +0.5
1,866,252 + ABIE41_RS09005 0.18 +0.2
1,866,337 - ABIE41_RS09005 0.24 +0.1
1,866,337 - ABIE41_RS09005 0.24 +0.4
1,866,426 + ABIE41_RS09005 0.30 -1.0
1,866,427 - ABIE41_RS09005 0.30 +0.7
1,866,654 + ABIE41_RS09005 0.46 -0.3
1,866,654 + ABIE41_RS09005 0.46 -0.4
1,866,655 - ABIE41_RS09005 0.46 +0.4
1,866,655 - ABIE41_RS09005 0.46 +0.6
1,866,786 + ABIE41_RS09005 0.55 -0.0
1,866,787 - ABIE41_RS09005 0.55 -2.0

Or see this region's nucleotide sequence